Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08F1.5
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Query: C08F1.5 CE31772 status:Partially_confirmed TR:O17176 protein_id:AAM98053.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MATH MATH domain 477.4 1.1e-139 7
hexapep Bacterial transferase hexapeptide (three rep 7.6 4.3 1
EF_TS Elongation factor TS 2.2 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MATH 1/7 11 130 .. 1 159 [] 47.5 8.7e-12
MATH 2/7 149 175 .. 1 35 [. 7.4 0.98
EF_TS 1/1 237 255 .. 227 245 .] 2.2 8.3
MATH 3/7 252 342 .. 35 155 .. 13.1 0.026
MATH 4/7 366 487 .. 1 159 [] 141.9 1.1e-38
MATH 5/7 521 636 .. 1 159 [] 85.0 3.9e-22
MATH 6/7 658 766 .. 1 159 [] 96.2 3.1e-25
MATH 7/7 783 896 .. 1 159 [] 116.5 5e-31
hexapep 1/1 887 904 .. 1 18 [] 7.6 4.3
Alignments of top-scoring domains:
MATH: domain 1 of 7, from 11 to 130: score 47.5, E = 8.7e-12
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
ti+n+S++ ++e++++ + + W+ l +++ +g
C08F1.5 11 TIENVSNFS-------DEENRFS-DELVWRKMIWK---LEVNKSDG- 45
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
flg++L+C + i ++k i ++ + k+vs+nGk + ++
C08F1.5 46 ------FLGVFLYCSLP--SG--ILCNKCQISAKVEYKIVSANGKIH-SE 84
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
s ++ + ++ ++ekp+ +++ Fi+W ++ +++ l+
C08F1.5 85 SG--VANSETK-----PSMEKPIHS-FPN-----FIKWREMDENF---LI 118
dDsiiiEaeVkI<-*
Ds iE++V
C08F1.5 119 ADSAKIEVHVQN 130
MATH: domain 2 of 7, from 149 to 175: score 7.4, E = 0.98
*->tiknfSkikeeakeGregeeyytspyeerfnipWr<-*
t+kn+S+++ e+e + ++ + W+
C08F1.5 149 TVKNVSRLE-------ENEVQFG-DSKACGQASWF 175
EF_TS: domain 1 of 1, from 237 to 255: score 2.2, E = 8.3
*->kelgenvkvtrFvRfEvGe<-*
k+++ nv++t F++ ++G+
C08F1.5 237 KTINMNVNITMFCFRRIGA 255
MATH: domain 3 of 7, from 252 to 342: score 13.1, E = 0.026
*->rlnvlriyrngggegrsgkflglyLhClkeekdsptienlkWsiete
r + +++g f+g+yL+ +++ s +ie
C08F1.5 252 R---IGAMKKDG-------FFGFYLQYENNLHTS---TDYSATIEPN 285
ftlklvsdnGksirrmssttltkktkdaknnshvFekptgegwgksGfkk
++l ++ + ++ + ++F ++++++++ G k
C08F1.5 286 CWLGIL-PKERHG-------QPDGKF------NSFPSEFDHRNTRVGNMK 321
FisWddLeddyngylvdDsiiiEa<-*
i+W +L+++y +v+Ds++i a
C08F1.5 322 MIEWKELRKKY---MVNDSVVIAA 342
MATH: domain 4 of 7, from 366 to 487: score 141.9, E = 1.1e-38
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
++ ++S+i ege+++ ++e+rfnipWr + ++r+ g
C08F1.5 366 KFSDVSNIA-------EGESRFG-SSEKRFNIPWR---VELKRESG- 400
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+++LhC+ ++ +s n+ W+i + +++ lvs+nG+
C08F1.5 401 ------FLAVHLHCEEGSRKS---DNAVWEIIVNCVFNLVSANGRN---- 437
ssttltkktkdaknnshvFekp.tgegwgksGfkkFisWddLeddyngyl
l++++++ak ++ vF+++++ eg +k Fi+Wdd+++dy +
C08F1.5 438 ----LMRRVESAK-SDTVFHRNnEKEGITK-----FIRWDDMMTDY---V 474
vdDsiiiEaeVkI<-*
v + +iiEa+V+
C08F1.5 475 VSNFVIIEARVDM 487
MATH: domain 5 of 7, from 521 to 636: score 85.0, E = 3.9e-22
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+ n+Sk+ +ge + ++e+r+n+ Wr ++ ++ +
C08F1.5 521 TVNNVSKFQ-------DGEKQWS-DTETRHNLQWR---IQAIKKAD- 555
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
flg++L C++ ++s + +Wsi+te t+ lvs nG
C08F1.5 556 ------FLGIFLFCDNA-YES----HEGWSIQTEVTFNLVSTNGHN---- 590
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ +Fek g g + Fi+Wd+ + y + +
C08F1.5 591 ----YKQAAM------LKFEKAGGQGITE-----FIKWDNVIETY--FNP 623
.dDsiiiEaeVkI<-*
D +i+Ea+Vk+
C08F1.5 624 lKDNLIVEAHVKV 636
MATH: domain 6 of 7, from 658 to 766: score 96.2, E = 3.1e-25
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
+++n+S+++ e+ ++ ++e W+ ++++ n+g
C08F1.5 658 VVRNVSNME-------EENVIFS-ASQE-----WS---MSMKNNNG- 687
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
f++l L C+ke + en W i+++f+l+lv ++ k
C08F1.5 688 ------FVELLLSCDKE--HT---ENEIWCIQAKFQLMLVGADDKI---- 722
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt ++ h Fe+ ++ g +k i+W+d++++y +v
C08F1.5 723 ----LTDFCE------HNFENAESAGDSK-----VIRWEDMLSQY---VV 754
dDsiiiEaeVkI<-*
dDs+++ a+V
C08F1.5 755 DDSVTFKARVVF 766
MATH: domain 7 of 7, from 783 to 896: score 116.5, E = 5e-31
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t k++ ++ ege+y++ ++e++ + pWr ++ ++
C08F1.5 783 TLKDIPNVQ-------EGESYFS-NTEKHCDAPWR---ISATKEQS- 817
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
+ +yLhC+k ++ + Wsi +e +l lvsd G+
C08F1.5 818 ------CILIYLHCDKR--LC---NDEHWSIKVEAQLVLVSDTGRT---- 852
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt k++ h+Fe+p+g+ w+k + W++Le+d+ +v
C08F1.5 853 ----LTDKVT------HIFERPEGIHWTK-----DLTWENLEKDF---MV 884
dDsiiiEaeVkI<-*
dDs+ iEa+VkI
C08F1.5 885 DDSVKIEARVKI 896
hexapep: domain 1 of 1, from 887 to 904: score 7.6, E = 4.3
*->gviIGdnvvIgpgvvIgd<-*
v+I+++v+I ++++++
C08F1.5 887 SVKIEARVKIVEHAEVAS 904