Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C08F1.5
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Query:  C08F1.5  CE31772    status:Partially_confirmed TR:O17176 protein_id:AAM98053.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
MATH     MATH domain                                    477.4   1.1e-139   7
hexapep  Bacterial transferase hexapeptide (three rep     7.6        4.3   1
EF_TS    Elongation factor TS                             2.2        8.3   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MATH       1/7      11   130 ..     1   159 []    47.5  8.7e-12
MATH       2/7     149   175 ..     1    35 [.     7.4     0.98
EF_TS      1/1     237   255 ..   227   245 .]     2.2      8.3
MATH       3/7     252   342 ..    35   155 ..    13.1    0.026
MATH       4/7     366   487 ..     1   159 []   141.9  1.1e-38
MATH       5/7     521   636 ..     1   159 []    85.0  3.9e-22
MATH       6/7     658   766 ..     1   159 []    96.2  3.1e-25
MATH       7/7     783   896 ..     1   159 []   116.5    5e-31
hexapep    1/1     887   904 ..     1    18 []     7.6      4.3

Alignments of top-scoring domains:
MATH: domain 1 of 7, from 11 to 130: score 47.5, E = 8.7e-12
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      ti+n+S++        ++e++++ +   +    W+   l +++ +g
     C08F1.5    11    TIENVSNFS-------DEENRFS-DELVWRKMIWK---LEVNKSDG- 45

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         flg++L+C     +   i ++k  i ++ + k+vs+nGk + ++
     C08F1.5    46 ------FLGVFLYCSLP--SG--ILCNKCQISAKVEYKIVSANGKIH-SE 84

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                   s   ++ + ++      ++ekp+   +++     Fi+W ++ +++   l+
     C08F1.5    85 SG--VANSETK-----PSMEKPIHS-FPN-----FIKWREMDENF---LI 118

                   dDsiiiEaeVkI<-*
                    Ds  iE++V
     C08F1.5   119 ADSAKIEVHVQN    130

MATH: domain 2 of 7, from 149 to 175: score 7.4, E = 0.98
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWr<-*
                      t+kn+S+++       e+e  +  ++   +   W+
     C08F1.5   149    TVKNVSRLE-------ENEVQFG-DSKACGQASWF    175

EF_TS: domain 1 of 1, from 237 to 255: score 2.2, E = 8.3
                   *->kelgenvkvtrFvRfEvGe<-*
                      k+++ nv++t F++ ++G+
     C08F1.5   237    KTINMNVNITMFCFRRIGA    255

MATH: domain 3 of 7, from 252 to 342: score 13.1, E = 0.026
                   *->rlnvlriyrngggegrsgkflglyLhClkeekdsptienlkWsiete
                      r   +   +++g       f+g+yL+ +++   s        +ie
     C08F1.5   252    R---IGAMKKDG-------FFGFYLQYENNLHTS---TDYSATIEPN 285

                   ftlklvsdnGksirrmssttltkktkdaknnshvFekptgegwgksGfkk
                   ++l ++ + ++              +      ++F  ++++++++ G  k
     C08F1.5   286 CWLGIL-PKERHG-------QPDGKF------NSFPSEFDHRNTRVGNMK 321

                   FisWddLeddyngylvdDsiiiEa<-*
                    i+W +L+++y   +v+Ds++i a
     C08F1.5   322 MIEWKELRKKY---MVNDSVVIAA    342

MATH: domain 4 of 7, from 366 to 487: score 141.9, E = 1.1e-38
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      ++ ++S+i        ege+++  ++e+rfnipWr   + ++r+ g
     C08F1.5   366    KFSDVSNIA-------EGESRFG-SSEKRFNIPWR---VELKRESG- 400

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         fl+++LhC+ ++ +s    n+ W+i + +++ lvs+nG+
     C08F1.5   401 ------FLAVHLHCEEGSRKS---DNAVWEIIVNCVFNLVSANGRN---- 437

                   ssttltkktkdaknnshvFekp.tgegwgksGfkkFisWddLeddyngyl
                       l++++++ak ++ vF+++++ eg +k     Fi+Wdd+++dy   +
     C08F1.5   438 ----LMRRVESAK-SDTVFHRNnEKEGITK-----FIRWDDMMTDY---V 474

                   vdDsiiiEaeVkI<-*
                   v + +iiEa+V+
     C08F1.5   475 VSNFVIIEARVDM    487

MATH: domain 5 of 7, from 521 to 636: score 85.0, E = 3.9e-22
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      t+ n+Sk+        +ge   + ++e+r+n+ Wr   ++  ++ +
     C08F1.5   521    TVNNVSKFQ-------DGEKQWS-DTETRHNLQWR---IQAIKKAD- 555

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         flg++L C++  ++s    + +Wsi+te t+ lvs nG
     C08F1.5   556 ------FLGIFLFCDNA-YES----HEGWSIQTEVTFNLVSTNGHN---- 590

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                        +           +Fek  g g +      Fi+Wd+  + y  + +
     C08F1.5   591 ----YKQAAM------LKFEKAGGQGITE-----FIKWDNVIETY--FNP 623

                   .dDsiiiEaeVkI<-*
                     D +i+Ea+Vk+
     C08F1.5   624 lKDNLIVEAHVKV    636

MATH: domain 6 of 7, from 658 to 766: score 96.2, E = 3.1e-25
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      +++n+S+++       e+   ++  ++e     W+   ++++ n+g
     C08F1.5   658    VVRNVSNME-------EENVIFS-ASQE-----WS---MSMKNNNG- 687

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         f++l L C+ke   +   en  W i+++f+l+lv ++ k
     C08F1.5   688 ------FVELLLSCDKE--HT---ENEIWCIQAKFQLMLVGADDKI---- 722

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       lt  ++      h Fe+ ++ g +k      i+W+d++++y   +v
     C08F1.5   723 ----LTDFCE------HNFENAESAGDSK-----VIRWEDMLSQY---VV 754

                   dDsiiiEaeVkI<-*
                   dDs+++ a+V
     C08F1.5   755 DDSVTFKARVVF    766

MATH: domain 7 of 7, from 783 to 896: score 116.5, E = 5e-31
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      t k++ ++        ege+y++ ++e++ + pWr   ++  ++
     C08F1.5   783    TLKDIPNVQ-------EGESYFS-NTEKHCDAPWR---ISATKEQS- 817

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                          + +yLhC+k   ++   +   Wsi +e +l lvsd G+
     C08F1.5   818 ------CILIYLHCDKR--LC---NDEHWSIKVEAQLVLVSDTGRT---- 852

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       lt k++      h+Fe+p+g+ w+k      + W++Le+d+   +v
     C08F1.5   853 ----LTDKVT------HIFERPEGIHWTK-----DLTWENLEKDF---MV 884

                   dDsiiiEaeVkI<-*
                   dDs+ iEa+VkI
     C08F1.5   885 DDSVKIEARVKI    896

hexapep: domain 1 of 1, from 887 to 904: score 7.6, E = 4.3
                   *->gviIGdnvvIgpgvvIgd<-*
                       v+I+++v+I  ++++++
     C08F1.5   887    SVKIEARVKIVEHAEVAS    904



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