hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C09B9.3
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Query:  C09B9.3  CE29571    status:Partially_confirmed SW:Q17851 protein_id:AAB37559.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF289   Putative membrane protein                     1253.7          0   3
WD40     WD domain, G-beta repeat                         6.1        6.3   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/1     208   228 ..     1    20 [.     6.1      6.3
DUF289     1/3       1   313 [.     1   332 [.   497.3 1.2e-145
DUF289     2/3     314   332 ..     1    19 [.    13.7    0.012
DUF289     3/3     339   819 ..    10   404 .]   747.4 5.9e-221

Alignments of top-scoring domains:
WD40: domain 1 of 1, from 208 to 228: score 6.1, E = 6.3
                   *->geclatl.gHtspvtcvafsp<-*
                      ++ ++ ++ H s v+ v+++p
     C09B9.3   208    WKEVSDFeTHLSRVRKVDWVP    228

DUF289: domain 1 of 3, from 1 to 313: score 497.3, E = 1.2e-145
                   *->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF
                      MTisY++dV+t+s + Ffk l+RWKGS+WK + +EL++Wl+lYy++
     C09B9.3     1    MTISYTYDVATESYFGFFKVLFRWKGSVWKLIHRELFMWLVLYYTV- 46

                   saIYRfaLsksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVvr
                   +aIYR+ L++++    ++iF++++++f + ++    LtFML FFVtt+v
     C09B9.3    47 LAIYRT-LDEER----KKIFRSNIEHFIN-FEP-SILTFMLSFFVTTIVQ 89

                   RWwkiFdniGwIDniAlavaayirGkdeeaRiiRRnIiRYlVLsQvLvFR
                   RW+ +F n+G+I+n+A+av+ +++++ e  R + R++iRYlV sQ+Lv R
     C09B9.3    90 RWNNVFTNMGFIENAAYAVSSFMKNG-EDVRRAQRTVIRYLVASQILVMR 138

                   DISmkVRkRFPTldtlVaAGlMteeEldklsesikskyyvgdkYWvPInW
                    IS+k ++RFP+++++V+AG++t+eE +++ ++++  y+   +  vPI+W
     C09B9.3   139 SISIKALRRFPNYESIVTAGFLTKEESTII-QNTDLSYD---SSCVPIRW 184

                   afsLlQyearkeGlIdsdylynvlwdeIkeFRtglalLsnyDWVPIPLvY
                   a + l + + + G++ s  +y++ w+e+ +F t l+++++ DWVPIPL+Y
     C09B9.3   185 AIQVL-RHQYRSGNFFSHSVYRATWKEVSDFETHLSRVRKVDWVPIPLAY 233

                   PQVVfLAVRlYFfvCLfgRQfldsddndnktenyIDlyfPVPFimTilQF
                   PQV+f+AVRlYF +C f+ Q++d+dd+d ++   I +yfP   i T++QF
     C09B9.3   234 PQVIFFAVRLYFVICAFAKQYFDLDDDDARYV--IHYYFP---IVTVFQF 278

                   IFyvGWmKVAEvLLNPlGEDDDDFEcNyiIDRNLa<-*
                   I+ +GW+KVAE+LLNPlGEDDDDFE+N++ID N++
     C09B9.3   279 ICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNIY    313

DUF289: domain 2 of 3, from 314 to 332: score 13.7, E = 0.012
                   *->MTisYnldVstssiwtFfk<-*
                      MT sYn dV+t s ++Ffk
     C09B9.3   314    MTMSYNCDVATDSYFNFFK    332

DUF289: domain 3 of 3, from 339 to 819: score 747.4, E = 5.9e-221
                   *->stssiwtFfkLllRWKGSiWKavwkELivWlflYyiIFsaIYRfaLs
                      st++++++f++l+RWKGS+WK++wkEL++W+++Yy+I +a+Y++ L+
     C09B9.3   339    STYKNNIIFQILFRWKGSVWKSIWKELALWIVTYYTI-KAVYMT-LD 383

                   ksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVvrRWwkiFdni
                   +++    + iF+k++ +  +++d    LtFML+FFVtt+v+RW+kiFdn+
     C09B9.3   384 DDR----KIIFDKNFLPKIANFDL-SVLTFMLTFFVTTIVARWNKIFDNM 428

                   GwIDniAlavaayirGkdee..............................
                   G+I+++A+a+aa++++k++e+  ++ +++++  + ++++++ ++++++++
     C09B9.3   429 GFIESAAYAIAAFMDDKNDEpilkpaqekkeiikledrtdsvekesdknt 478

                   ..................................................
                   +++++++++++++ +++ ++ +  +++  +  +++++ ++ +  ++++++
     C09B9.3   479 knkkkssgeqnktvksgaenmkilkpdavkyvekqkeleklnaakkeeer 528

                   .............aRiiRRnIiRYlVLsQvLvFRDISmkVRkRFPTldtl
                    + ++ + +++++ R++RR+IiRYlV sQvLv+R+ISm++++RFP+++++
     C09B9.3   529 melekldaerknkLRMARRTIIRYLVASQVLVLRTISMRTLRRFPNYTSI 578

                   VaAGlMteeEldklsesikskyyvgdkYWvPInWafsLlQyear......
                   VaAG+++++E d++ e+++++y+   ++WvPI+Wa+++l +e++   + +
     C09B9.3   579 VAAGFLHQDEADII-ENMDFEYD---RTWVPIRWATEIL-REQFmavsat 623

                   .keGlIdsdylynvlwdeIkeFRtglalLsnyDWVPIPLvYPQVVfLAVR
                   +k+++++++ ly+++w+eIk+F+ +++++ n DWVPIPL+YPQV+f+AVR
     C09B9.3   624 nKDHPFAAPSLYSAAWQEIKNFQASISVVKNADWVPIPLAYPQVIFFAVR 673

                   lYFfvCLfgRQfldsddndnkte...nyIDlyfPVPFimTilQFIFyvGW
                   lYF++C+f+RQ++++d+++++t++++nyI++y+P   + +i+QFI+ +GW
     C09B9.3   674 LYFIFCTFTRQHMLTDPEIDRTIdssNYITYYIP---LGNIFQFICLMGW 720

                   mKVAEvLLNPlGEDDDDFEcNyiIDRNLavGlaIVDtlWvkEnqydrhPe
                   +KV+E+LLNPlGEDDDDFE+N++IDRN+++G+aIVDt+      y+++P+
     C09B9.3   721 VKVSEALLNPLGEDDDDFEVNFLIDRNIYTGMAIVDTE------YAECPA 764

                   lek........DvFwdedaePlYstsesFakipnnplvGSaanvklsend
                   l+k++ ++++ D+F++e+a+P+Y++ ++   i ++ lvGSa+n+k++++
     C09B9.3   765 LKKknlgkekiDAFEGEHARPFYPHGMD-GSIGDA-LVGSAQNMKFDDP- 811

                   veEvkmvph<-*
                    +E+k++++
     C09B9.3   812 -PEMKQFSV    819

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