Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C09D4.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C09D4.3 CE27672 SER\/THR protein kinase status:Partially_confirmed TR:O01733 protein_id:AAB53978.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 32.9 4.8e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 88 213 .. 1 131 [. 32.9 4.8e-08
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 88 to 213: score 32.9, E = 4.8e-08
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+ l +klG G++G+V++ + g+ VA+K k s+ + +
C09D4.3 88 FILRQKLGDGAMGHVFLSIFG---GRSVAIKAE---KYSTGM--LPM 126
EiqilkrLs.HpNIvrligvfed...tddhlylvmEymegGdLfdylrrn
Ei++l ++++H N v + ++ ++ + ++ y++ +++ dL+++ ++
C09D4.3 127 EIKVLLSIRrH-NGVHFCDIIDYgtiRREYNYMIISILGK-DLYRLRAEQ 174
g.gplsekeakkialQilrGleYLHsngivHRDLKpeNI<-*
++ ++ + kial++ +++e LH+ g + RD+Kp+N+
C09D4.3 175 PtRSFTLNTTTKIALETIEAIEELHNIGYLSRDVKPSNF 213