Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C09D4.3
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Query:  C09D4.3  CE27672   SER\/THR protein kinase status:Partially_confirmed TR:O01733 protein_id:AAB53978.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                           32.9    4.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1      88   213 ..     1   131 [.    32.9  4.8e-08

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 88 to 213: score 32.9, E = 4.8e-08
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
                      + l +klG G++G+V++ +     g+ VA+K     k s+    + +
     C09D4.3    88    FILRQKLGDGAMGHVFLSIFG---GRSVAIKAE---KYSTGM--LPM 126

                   EiqilkrLs.HpNIvrligvfed...tddhlylvmEymegGdLfdylrrn
                   Ei++l ++++H N v + ++   ++ + ++ y++   +++ dL+++  ++
     C09D4.3   127 EIKVLLSIRrH-NGVHFCDIIDYgtiRREYNYMIISILGK-DLYRLRAEQ 174

                   g.gplsekeakkialQilrGleYLHsngivHRDLKpeNI<-*
                    ++ ++ +   kial++ +++e LH+ g + RD+Kp+N+
     C09D4.3   175 PtRSFTLNTTTKIALETIEAIEELHNIGYLSRDVKPSNF    213



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