Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C09D8.1b
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Query: C09D8.1b CE30245 locus:ptp-3 protein-tyrosine phosphatase with fibronectin type III-like domains (DPTP and LAR like) status:Partially_c
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 787.5 5.2e-233 2
fn3 Fibronectin type III domain 114.9 9.9e-32 5
PKD PKD domain 6.5 0.71 1
Amino_oxidase Flavin containing amine oxidoreductase 4.9 1.8 1
cytochr_b558a Cytochrome Cytochrome b558 alpha-subuni 3.0 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fn3 1/5 37 130 .. 1 84 [] 62.9 1e-16
fn3 2/5 142 230 .. 1 84 [] 8.0 0.76
cytochr_b558a 1/1 223 256 .. 160 191 .] 3.0 2.2
fn3 3/5 260 330 .. 17 84 .] 14.7 0.0088
PKD 1/1 328 365 .. 1 48 [. 6.5 0.71
fn3 4/5 343 434 .. 1 84 [] 31.2 1.4e-07
fn3 5/5 445 527 .. 1 73 [. 1.7 48
Amino_oxidase 1/1 660 677 .. 409 426 .] 4.9 1.8
Y_phosphatase 1/2 937 1168 .. 1 274 [] 438.9 4.5e-128
Y_phosphatase 2/2 1225 1458 .. 1 274 [] 354.9 8.9e-103
Alignments of top-scoring domains:
fn3: domain 1 of 5, from 37 to 130: score 62.9, E = 1e-16
*->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
PsaP+n+ ++ +++ts+ l+W++p ng + gY v + +ge+
C09D8.1b 37 PSAPRNFNAELTSATSVKLTWDAPAaANGALLGYYVYL-DRMVNGEp 82
........wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-
++++++ + +++++ ++l L P+teY++r+ A n++G+G++S
C09D8.1b 83 vvekgskkRIVMIRDSSKRYFELDSLDPNTEYSFRLNAFNRNGdGEFS 130
*
C09D8.1b - -
fn3: domain 2 of 5, from 142 to 230: score 8.0, E = 0.76
*->PsaPtnltvtdv...tstsltlsWsppt...gngpitgYevtyRqpk
P aP+ ++v+ +++ + ++++W+ p+ +++ pi++Y++ + +
C09D8.1b 142 PEAPEIVSVSLDrdePPVVARIEWKMPKmkpNETPIEKYNL-W-LRA 186
ngge...wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
g +++ + +tv+gt s t++gL g+ Y v ++A n++ +S
C09D8.1b 187 QGYPdsyVKAKTVDGTDLSTTISGLWMGVVYDVLLAAENRE--GRS 230
cytochr_b558a: domain 1 of 1, from 223 to 256: score 3.0, E = 2.2
*->aEaRKKPsEeeaaavpa..GgPqvnPiPvtDEvv<-*
aE R s ++ ++++++ G+P +Pi v Ev+
C09D8.1b 223 AENREGRSQNATETIATpvGSPDGEPIDVQYEVM 256
fn3: domain 3 of 5, from 260 to 330: score 14.7, E = 0.0088
*->ltlsWsppt...gngpitgYevtyRqpkngge...wneltvpgttts
+++sW pp++++ ng it+Y+ + + + ++ ++ + p+t+++
C09D8.1b 260 IVVSWRPPSeekRNGNITSYKAIL-SAMDATAdryEQPVPAPSTSST 305
ytltgLkPgteYevrVqAvnggG.GpeS<-*
++++ + Y ++V+A + +G Gp+S
C09D8.1b 306 FEVN---VRRAYLFKVAAATMKGiGPYS 330
PKD: domain 1 of 1, from 328 to 365: score 6.5, E = 0.71
*->epvpglsvsasaveegpsvvalgetVtFtassSydpdpgspvsysWd
+ p+l++++ ++ v ++++V+++a+s +s + ++Wd
C09D8.1b 328 PYSPVLTINPD----PAALVGPPTNVRVEATS------NSTAVVQWD 364
F<-*
F
C09D8.1b 365 F 365
fn3: domain 4 of 5, from 343 to 434: score 31.2, E = 1.4e-07
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyR.qpkngge.
++Ptn++v++++ ++++++W+ + + +++ v+y ++p n +++
C09D8.1b 343 VGPPTNVRVEATSNSTAVVQWDFE--SQKADSFVVKYMhEPGNRMDt 387
.......wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
++ ++ + ++++ ++++ +++++L+++ +Y ++V Av+++ +Gp S
C09D8.1b 388 ekwkqlpVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVKNNRqGPCS 434
fn3: domain 5 of 5, from 445 to 527: score 1.7, E = 48
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
P+ ++nl+v ts+s++l+W+ + g+ v +++ +
C09D8.1b 445 PtYMVQNLRVLWKTSNSVQLTWEYN--GPRNVGFYV--N-HTGRKDy 486
....wnelt.........vpgtttsytltgLkPgteYevrV<-*
+++ +e+t ++++ +++v+ ++y t+L+P++ Y++ V
C09D8.1b 487 vnheLQEKTmstpgfgqdVDEKHREYLWTNLRPHMMYTIHV 527
Amino_oxidase: domain 1 of 1, from 660 to 677: score 4.9, E = 1.8
*->gtveGAveSGlraArril<-*
+tv+GA+ +++ A+r+
C09D8.1b 660 ATVPGAYVTARLSADRVK 677
Y_phosphatase: domain 1 of 2, from 937 to 1168: score 438.9, E = 4.5e-128
*->NkeKNRykdilpyDhtRVkLk.....egsDYINAnyidgpqsrtlvv
Nk+KNRy ++ +yDh+RV+L++ ++ +g DYINAny+dg
C09D8.1b 937 NKHKNRYANVAAYDHSRVVLSnvegyPGMDYINANYVDG-------- 975
ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtC
y kp+ yIaTQgPlp+T+ DFWrMvwe+++ +IVMLt+l+E++r +K C
C09D8.1b 976 YDKPRSYIATQGPLPETFSDFWRMVWEEQSVTIVMLTNLEERSR--VK-C 1022
aqYWPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdesk
+qYWP+ +g+ tyGdi+Vtl + + ++yt+Rt++l++ g+
C09D8.1b 1023 DQYWPS-----RGTATYGDIEVTLLESVH--LAHYTMRTMRLKMvGE--- 1062
neakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqe
e+r+++h++yt+WPDhgvP++ p+++l fl++v++ ++
C09D8.1b 1063 ---------PEVREIKHLQYTAWPDHGVPDH-PTPFLIFLKRVKTLNP-- 1100
nesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvv
+d+g Pi+ HCSAGiGRTG+fi+id++l++l+ +++v
C09D8.1b 1101 -------NDAG-------PIISHCSAGIGRTGAFIVIDCMLERLRYDNTV 1136
idifdivkelRsqRpgmVQteeQYiFiydaile<-*
di+++v lR+qR++mVQteeQYiFi+da+l+
C09D8.1b 1137 -DIYGCVTALRAQRSYMVQTEEQYIFIHDAVLD 1168
Y_phosphatase: domain 2 of 2, from 1225 to 1458: score 354.9, E = 8.9e-103
*->NkeKNRykdilpyDhtRVkLk.....egsDYINAnyidgpqsrtlvv
N++KNR +pyD++RV++ ++ +gsDYINA++idg
C09D8.1b 1225 NRPKNRMLSAVPYDSNRVIMRllpgaDGSDYINASWIDG-------- 1263
ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtC
yk++ ayIaTQ+P +T +DFWr +we+++++I+ML + +E+g+ e+ C
C09D8.1b 1264 YKERGAYIATQAPTNETAADFWRAIWEHNSPIIAMLVRTNERGQ--EQ-C 1310
aqYWPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdesk
+ YWP+ ++ ++ G + V+ + e+ +++y++R++++++ ++
C09D8.1b 1311 SDYWPL-----ETGVQVGMLVVEPMAEYD--MKHYHLREFRISDiNT--- 1350
neakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqe
+e+rtV+++h+++WPD g P + ++++ldf+ +v++++ q
C09D8.1b 1351 ---------REVRTVRQFHFMEWPDVGKPHT-ADHFLDFVTQVHNTYAQ- 1389
nesgeaspdsgprSs.ctgPivVHCSAGiGRTGtfiaidillqqleaegv
++ctgPi+VHC G+GRT++fia++i+l++++ae+v
C09D8.1b 1390 --------------FgCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHV 1425
vidifdivkelRsqRpgmVQteeQYiFiydaile<-*
v d+f +vk lR +R +m+Q +eQY F+y a+ e
C09D8.1b 1426 V-DVFTTVKLLRTERQNMIQEPEQYHFLYLAAYE 1458
[output cut off at A = 10 top alignments]