hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C09G5.6
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Query:  C09G5.6  CE01486  locus:bli-1 collagen status:Partially_confirmed SW:Q09457 protein_id:CAA86755.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Collagen      Collagen triple helix repeat (20 copies    75.4      3e-19   3
Col_cuticle_N Nematode cuticle collagen N-terminal do    68.1    7.5e-19   1
DUF643        Protein of unknown function (DUF643)        3.1        9.6   1
Phytase       Phytase                                     2.7        4.2   1
Guanylin      Guanylin precursor                          1.9        3.7   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Guanylin        1/1       2    29 ..     1    30 [.     1.9      3.7
DUF643          1/1      30    37 ..     1     8 [.     3.1      9.6
Phytase         1/1       1    43 [.     1    43 [.     2.7      4.2
Col_cuticle_N   1/1      15    77 ..     1    66 []    68.1  7.5e-19
Collagen        1/3     390   419 ..    11    40 ..    15.9   0.0071
Collagen        2/3     441   500 ..     1    60 []    48.3  8.9e-12
Collagen        3/3     509   557 ..     1    49 [.    26.5  8.3e-06

Alignments of top-scoring domains:
Guanylin: domain 1 of 1, from 2 to 29: score 1.9, E = 3.7
                   *->MnafllsaLcLsavAvvLlvlaqltqsVti<-*
                       ++ +l++  L+a+A +Ll++ +    V+i
     C09G5.6     2    VKSYTLAG--LAAIACLLLAIGAVISTVYI    29

DUF643: domain 1 of 1, from 30 to 37: score 3.1, E = 9.6
                   *->iNEISdFY<-*
                       N ISdFY
     C09G5.6    30    LNDISDFY    37

Phytase: domain 1 of 1, from 1 to 43: score 2.7, E = 4.2
                   *->mkvsKtlL.LsaAAGLlLsltAvsvsAkHklseeyHFkvtAaaE<-*
                      m  s tl +L+a A LlL+++Av +     l++   F  +A+ E
     C09G5.6     1    MVKSYTLAgLAAIACLLLAIGAVISTV-YILNDISDFYSEAQEE    43

Col_cuticle_N: domain 1 of 1, from 15 to 77: score 68.1, E = 7.5e-19
                   *->SgvAvlacLftvpsiyndInsfqdevmdemdeFKvyaddaWneMvdv
                      +++  +++++++++i+ndI++f++e+++e+ eFK++a+++W+eMv
     C09G5.6    15    CLLLAIGAVISTVYILNDISDFYSEAQEELVEFKDIANNIWEEMVFE 61

                   qrnvrppskpasarfgrpf<-*
                    +++ ++   +++  +r +
     C09G5.6    62 LTPEEMR---EAEDNDREK    77

Collagen: domain 1 of 3, from 390 to 419: score 15.9, E = 0.0071
                   *->ppGppGppGppGpaGapGppGppGepGpPG<-*
                      p GppGp+G pGp+G+pG  Gp+G +G  G
     C09G5.6   390    PSGPPGPRGRPGPPGFPGQDGPRGLRGLNG    419

Collagen: domain 2 of 3, from 441 to 500: score 48.3, E = 8.9e-12
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppG++Gp G pG pG+ G  G++G  G  G pG+pG+PG  G +G+
     C09G5.6   441    GPPGERGPDGTPGVPGEDGIDGEQGVNGQDGQPGAPGAPGYHGMNGS 487

                   pGppGapGapGpp<-*
                   pG pG+pG pG +
     C09G5.6   488 PGTPGKPGLPGRN    500

Collagen: domain 3 of 3, from 509 to 557: score 26.5, E = 8.3e-06
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppG+pG  G pG +G+pG  G+ G  G+pG +G+pG++G  Gp+G+
     C09G5.6   509    GPPGQPGVMGVPGRDGDPGTDGEHGQDGSPGIQGPPGRDGTSGPDGQ 555

                   pG<-*
                   pG
     C09G5.6   556 PG    557

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