hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C09G5.1
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Query:  C09G5.1  CE01481  locus:gbr-4 gamma-aminobutyric-acid receptor (beta-1 subunit) status:Predicted SW:Q09453 protein_id:CAA86760.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Neur_chan_memb Neurotransmitter-gated ion-channel tra   136.9    1.6e-39   2
Neur_chan_LBD  Neurotransmitter-gated ion-channel lig   129.9    4.6e-35   1
PS_pyruv_trans Polysaccharide pyruvyl transferase         2.5        8.1   1
DUF444         Protein of unknown function (DUF444)       2.2         10   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Neur_chan_LBD    1/1      36   197 ..    51   246 .]   129.9  4.6e-35
Neur_chan_memb   1/2     204   295 ..     1    94 [.    98.0  4.9e-28
DUF444           1/1     353   373 ..     1    21 [.     2.2       10
PS_pyruv_trans   1/1     368   388 ..   392   412 .]     2.5      8.1
Neur_chan_memb   2/2     371   407 ..   254   291 .]    37.6  2.9e-10

Alignments of top-scoring domains:
Neur_chan_LBD: domain 1 of 1, from 36 to 197: score 129.9, E = 4.6e-35
                   *->dlttnvwlrqgqWtDpRLaWnpsdplddeddyggikslrlpsddehd
                      d+++++++++ +W D+RL++n +           +k+  l +
     C09G5.1    36    DFQVDIYFQE-KWVDHRLQHNNTK-------RILVKDPKLFGL---- 70

                   mldkIWlPDiflyNqttskadgnhdvttpntnvrvypglkdGtVlwsppa
                       +W PD+++ N   +  + +hdvt pn +v++yp   +GtV++ +++
     C09G5.1    71 ----LWHPDLYFAN---ARTASFHDVTQPNFLVWIYP---NGTVWYDCRI 110

                   iykssCpmdltyFPFDqQnCslkFgSwtYngdevdlqwkdd.....leei
                   +++  C+ dl ++P+D+QnC l + S++Y++++++++w+ +++ + + +i
     C09G5.1   111 SLTVLCMQDLARYPLDSQNCGLRILSYAYDEEQLIIRWNGGnpvevNRGI 160

                   dLpdFtengeWdlldvpakrnekpygcyselsgagLnklvYpditfyfvl
                   ++pd+++  +   +     r  + +g +s                 +f+
     C09G5.1   161 RMPDMHLKHIKFYTK----RDKYATGIWSSAV-------------AEFHV 193

                   rRkp<-*
                    R +
     C09G5.1   194 DREI    197

Neur_chan_memb: domain 1 of 2, from 204 to 295: score 98.0, E = 4.9e-28
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                       +iP  LI++ sw +F+L  +a+P +v+L+I++LLtl + +  +r
     C09G5.1   204    SYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQSSAARMA 250

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmp<-*
                   lP  S v+++++++ ++ +fv++a ie++vv++ v +R+  +t+  p
     C09G5.1   251 LPQASDVKAIDVWMGTCMAFVFSAMIEFTVVNYCV-RRKV-RTKIKP    295

DUF444: domain 1 of 1, from 353 to 373: score 2.2, E = 10
                   *->MgiFiDrrlNgtlkdKstvnR<-*
                       ++F+ r+l +t k+K++ +R
     C09G5.1   353    ASLFVRRSLLPTSKRKTIEDR    373

PS_pyruv_trans: domain 1 of 1, from 368 to 388: score 2.5, E = 8.1
                   *->ekettlskrveevrksalknf<-*
                      + ++++ +rvee rk+a k++
     C09G5.1   368    KTIEDRINRVEENRKNAQKID    388

Neur_chan_memb: domain 2 of 2, from 371 to 407: score 37.6, E = 2.9e-10
                   *->kdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
                      +d ++ v+e+ k  a++IDR+++++Fp++f++++++y+
     C09G5.1   371    EDRINRVEENRK-NAQKIDRYSRALFPLAFIIFNIFYW    407

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