Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C09G9.6
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Query: C09G9.6 CE03005 locus:moe-1 Zinc finger protein status:Partially_confirmed TR:Q17877 protein_id:CAA90986.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and simil 86.3 2.1e-24 2
DUF359 Protein of unknown function (DUF359) 3.8 2.8 1
DUF668 Protein of unknown function (DUF668) 3.0 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF359 1/1 34 54 .. 28 50 .. 3.8 2.8
zf-CCCH 1/2 113 139 .. 1 27 [] 42.7 3.4e-11
zf-CCCH 2/2 155 181 .. 1 27 [] 46.7 2.1e-12
DUF668 1/1 396 402 .. 87 93 .] 3.0 6.2
Alignments of top-scoring domains:
DUF359: domain 1 of 1, from 34 to 54: score 3.8, E = 2.8
*->vrdisegkpsvviTVGDvVTkna<-*
++d+s+++p + +GD+VT++a
C09G9.6 34 AKDLSQTNP--NAQIGDLVTQTA 54
zf-CCCH: domain 1 of 2, from 113 to 139: score 42.7, E = 3.4e-11
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
ykt++C+ ++++ tC++ d+C+FaHge
C09G9.6 113 YKTVICQAWLESKTCSFADNCRFAHGE 139
zf-CCCH: domain 2 of 2, from 155 to 181: score 46.7, E = 2.1e-12
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
ykt+lC+++ +tG C+yG rC F+H++
C09G9.6 155 YKTKLCDKYTTTGLCPYGKRCLFIHPD 181
DUF668: domain 1 of 1, from 396 to 402: score 3.0, E = 6.2
*->lAhNtIk<-*
lA+N++k
C09G9.6 396 LAENMTK 402