hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C09H10.2
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Query:  C09H10.2  CE02131   60S ribosomal protein status:Confirmed SW:P48166 protein_id:CAA90434.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Ribosomal_L44 Ribosomal protein L44                     169.9    1.7e-47   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Ribosomal_L44   1/1      18    94 ..     1    80 []   169.9  1.7e-47

Alignments of top-scoring domains:
Ribosomal_L44: domain 1 of 1, from 18 to 94: score 169.9, E = 1.7e-47
                   *->kHtlHkVeqyKkGKaSllawGkRrkydRkqsGygGqtkPvfhkkaKp
                      kHt HkV+qyKkGK+S +a+G+Rr ydRkqsG+gGqtkP+f+kkaK+
    C09H10.2    18    KHTNHKVTQYKKGKESKFAQGRRR-YDRKQSGFGGQTKPIFRKKAKT 63

                   tKKivLRleCteCkkahqraiGskRakrfElie<-*
                   tKKivLR+eCteCk+++q++i  kR+k+fEl++
    C09H10.2    64 TKKIVLRMECTECKHKKQLPI--KRCKHFELGG    94

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