Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C09H10.3
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Query: C09H10.3 CE02132 locus:nuo-1 NADH-ubiquinone oxidoreductase status:Partially_confirmed TR:Q17880 protein_id:CAA90435.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Complex1_51K Respiratory-chain NADH dehydrogenase 51 595.0 4.7e-175 1
Replicase Replicase family 5.3 2.5 1
LMWPc Low molecular weight phosphotyrosine pro 4.6 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Replicase 1/1 209 232 .. 238 261 .] 5.3 2.5
Complex1_51K 1/1 71 333 .. 1 268 [] 595.0 4.7e-175
LMWPc 1/1 451 467 .. 146 162 .] 4.6 4.6
Alignments of top-scoring domains:
Replicase: domain 1 of 1, from 209 to 232: score 5.3, E = 2.5
*->hRgdgqlvyeatlpeiQaarGRkg<-*
hRg+g++++ + ++ i + +G++g
C09H10.3 209 HRGAGAYICGEETALIESLEGKQG 232
Complex1_51K: domain 1 of 1, from 71 to 333: score 595.0, E = 4.7e-175
*->ggyerllkkalttmspeeiIeeVkaSGLRGRGGAGFPTGlKWsfmpk
g++++ +k ++ ++++++i+ e k SGLRGRGGAGFP+G+KW fm+k
C09H10.3 71 GDWHK-TKEII-LKGSDWILGELKTSGLRGRGGAGFPSGMKWGFMNK 115
degakgkpkYLicNADEgEPGtfkDRrLmehdPhkliEGilIaaYAlgAr
+ +g+pkYL++NADEgEPGt+kDR++m+hdPhkliEG+lI++ A+gAr
C09H10.3 116 P--FDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGAR 163
kgyIYIRgEypqaikrLrrAIqEAyeaGLLGkNIlGSGFDFDievhvGAG
++yIYIRgE+++++ +L++AI+EAy+aG+LGk+ lG+G+ FD++vh+GAG
C09H10.3 164 AAYIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAG 213
AYiCGEETALieSlEGKrGkPRlKPPFPAqsGlwGkPTlVnNVETlAaVp
AYiCGEETALieSlEGK+GkPRlKPPFPA++Gl+G+PT+V+NVET+A+ p
C09H10.3 214 AYICGEETALIESLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAP 263
rIirrGadwfasiGteksaGtKLftlsGhgvkrPGlyEvpmGttLRElie
+I+rrG+dwfas+G+e+++GtKLf++sG v++P+++E++m+++L++lie
C09H10.3 264 TICRRGGDWFASFGRERNRGTKLFCISGQ-VNNPCTVEEEMSVPLKDLIE 312
dygGGvrgGwdelkAVqpGGP<-*
+++GGv gGwd+l A++pGG+
C09H10.3 313 RHCGGVIGGWDNLLAIIPGGS 333
LMWPc: domain 1 of 1, from 451 to 467: score 4.6, E = 4.6
*->eevrdeIeervkkllke<-*
+++r e+e+r+++++k+
C09H10.3 451 RHFRPELERRMAEFHKQ 467