Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C09H5.2
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Query: C09H5.2 CE24797 ATPase status:Partially_confirmed TR:O16331 protein_id:AAB65385.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
E1-E2_ATPase E1-E2 ATPase 191.9 2.5e-57 1
Cation_ATPase_C Cation transporting ATPase, C-terminu 172.3 3.5e-51 1
Cation_ATPase_N Cation transporter/ATPase, N-terminus 79.6 2.8e-21 1
Hydrolase haloacid dehalogenase-like hydrolase 68.7 2.5e-17 3
Competence Competence protein 7.0 1 1
HIG_1_N Hypoxia induced protein conserved reg 6.9 2.4 1
MnhB Domain related to MnhB subunit of Na+ 5.6 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cation_ATPase_N 1/1 31 120 .. 1 87 [] 79.6 2.8e-21
HIG_1_N 1/1 293 307 .. 59 73 .] 6.9 2.4
E1-E2_ATPase 1/1 134 370 .. 1 245 [] 191.9 2.5e-57
Hydrolase 1/3 374 387 .. 1 14 [. 4.9 4.7
Hydrolase 2/3 619 670 .. 63 111 .. 28.7 1.7e-06
Hydrolase 3/3 720 770 .. 130 184 .] 36.9 1e-08
MnhB 1/1 875 902 .. 114 141 .] 5.6 3
Competence 1/1 998 1033 .. 257 292 .] 7.0 1
Cation_ATPase_C 1/1 866 1043 .. 1 196 [] 172.3 3.5e-51
Alignments of top-scoring domains:
Cation_ATPase_N: domain 1 of 1, from 31 to 120: score 79.6, E = 2.8e-21
*->eelkkevdldahkltvEevlerLktd........peeGLsseeaaeR
+l+ ++ +h++ + ++ er+ ++ + +++ ++GL+ +eaa+
C09H5.2 31 KDLSSSFV--EHQMHIAQLSERFFHSkidivepkKSKGLTKQEAAQK 75
lkkyGpNeLppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlyg<-
lk +G+N+L p+k+ s ++f++QFk++l+ l+++AA+++ f++y+
C09H5.2 76 LKTDGKNALSPPKTISNMELFVRQFKNLLWVLMFGAAALC---FLTYI 120
*
C09H5.2 - -
HIG_1_N: domain 1 of 1, from 293 to 307: score 6.9, E = 2.4
*->AQGfTVaALvaGvvy<-*
+Q+ TV+A+++++v+
C09H5.2 293 VQFITVMAITMATVI 307
E1-E2_ATPase: domain 1 of 1, from 134 to 370: score 191.9, E = 2.5e-57
*->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei
i++iv++ ++f++e + ++a+ l+p+ ++V+RdG ke+ +
C09H5.2 134 FIVAIVFIMCVVSFFEEKKGVEVVRAFQTLMPTSCQVIRDG-KEILL 179
paeeLvpGDiVevkpGdrVPADgrvvegestLkVDESaLTGESlPVeKhs
+ eeLv+GD+V+v+ G +VPAD+r++++++ + S++TGE++P e hs
C09H5.2 180 NPEELVVGDVVVVRSGCKVPADMRIIACTD-FFLETSSITGEAEPLEFHS 228
dvvtpdnp.lergnmVfaGTlvvsGsltgvVtatGddTflgkIakLVeeA
+++ ++ e n++f G+ +v+G+++g++++tG++T++g+Ia+L+ ++
C09H5.2 229 KTADAKTSiFESYNIAFNGSFCVDGEGYGIIIRTGENTVIGQIASLTLGQ 278
qssktPlQrlldkfgkiltpvililavlvfiiwllrnfnaafggswlegl
k ++ ++++f +++t++++++a+++f i+ll+ + g ++++
C09H5.2 279 KDKKCKFETEIERFVQFITVMAITMATVIFTIGLLV----NGGNDVIR-- 322
lyalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpAvEt<
+ ++ + +++a++P gLp++vt+ l++ ++rmAkk++ K+l+ +
C09H5.2 323 -LFVTGFLMVIIANVPQGLPTTVTTELTIIARRMAKKNVFLKKLEKIDS 370
-*
C09H5.2 - -
Hydrolase: domain 1 of 3, from 374 to 387: score 4.9, E = 4.7
*->ikavvFDkDGTLtd<-*
+ +++ Dk+GTLt+
C09H5.2 374 TTLIASDKTGTLTK 387
Hydrolase: domain 2 of 3, from 619 to 670: score 28.7, E = 1.7e-06
*->ld.evlglial.dklypgarealkaLkerGikvailTngdr.naeal
++ ++lg a d++++++++a+ka+ke+Gikv+++T+++ ++a+a+
C09H5.2 619 DNwDFLGMSAImDPPRDDTPRAIKACKEAGIKVYMVTGDHKsTATAI 665
lealg<-*
+++ g
C09H5.2 666 ARQIG 670
Hydrolase: domain 3 of 3, from 720 to 770: score 36.9, E = 1e-08
*->ivvgKPkpeifllalerlgvkpeevgpevlmvGDginDapalaaAGv
iv+++ pe +l ++ + ++++e + v + GDg+nDapal++A+v
C09H5.2 720 IVFARTTPEHKLMIVTESQKRGE-C---VTVTGDGVNDAPALKKADV 762
gvamgngg<-*
gvamg++g
C09H5.2 763 GVAMGLAG 770
MnhB: domain 1 of 1, from 875 to 902: score 5.6, E = 3
*->lleaglitalnfdvGlkvgvggvgvfil<-*
l + glit+++++ +++ vggv++ +l
C09H5.2 875 LVTKGLITYTYLFMSIFISVGGVVAYLL 902
Competence: domain 1 of 1, from 998 to 1033: score 7.0, E = 1
*->lllavpnaawvvvaapllllllallslllllllrll<-*
l+++vp ++v+++ p+++ ++++ ++ +++++ +
C09H5.2 998 LFTFVPGVQYVFGSQPPPWECWLVPVIVGIWIWIFN 1033
Cation_ATPase_C: domain 1 of 1, from 866 to 1043: score 172.3, E = 3.5e-51
*->RpPRnpkkDeliftgllffrylviGvivavatlaaFvwwfygggenG
+pPR++ ++l+++gl++++yl++ ++++v++++a+++ +y g
C09H5.2 866 QPPRKRE-THLVTKGLITYTYLFMSIFISVGGVVAYLLSYYLNG--- 908
edfgPhllygqlshwescgan..tdsfkgqewCeifrkglearaqTmaFt
++P++l ++++++ ga + t+++ g + +++++++++a+a +++++
C09H5.2 909 --IYPSELAFSSNDHFKVGASnfTTYN-GVVLNAEQQVFMAAQAAAAFHI 955
vlVviqmfNAWEalncrsefFmhpldrnSlfqmgpgLfrNkwLllAvvls
Vv q+++ +++c+++ r+S+f++g + N++ +lAv++
C09H5.2 956 AVVVGQAWH---LWMCLTR-------RVSIFVHG---MANIVAILAVIID 992
lalqllivYvPglqtiFgthpllslqeW.vvigfsflvfildElrKfikR
l+l +l+++vPg+q++Fg p+ +++W v++ ++++++i++ElrKf +R
C09H5.2 993 LLLICLFTFVPGVQYVFGSQPP-PWECWlVPVIVGIWIWIFNELRKFGIR 1041
rr<-*
+
C09H5.2 1042 NY 1043