Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C11E4.6
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Query:  C11E4.6  CE31411   ankyrin repeats status:Partially_confirmed TR:Q93203 protein_id:CAB02658.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ank      Ankyrin repeat                                 102.4    2.3e-27   5
SAM      SAM domain (Sterile alpha motif)                56.9    1.2e-14   2
PID      Phosphotyrosine interaction domain (PTB/PID)    29.7    3.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ank        1/5      61    84 ..     1    24 [.     9.1     0.86
ank        2/5      95   131 ..     1    33 []    15.9     0.01
ank        3/5     133   165 ..     1    33 []    34.2  5.9e-08
ank        4/5     218   246 ..     5    33 .]    18.3    0.002
ank        5/5     249   278 ..     4    33 .]    26.1  1.2e-05
SAM        1/2     890   899 ..    59    68 .]     1.8       59
SAM        2/2     904   970 ..     1    68 []    54.9  4.5e-14
PID        1/1    1023  1141 ..     1   157 [.    29.7  3.5e-07

Alignments of top-scoring domains:
ank: domain 1 of 5, from 61 to 84: score 9.1, E = 0.86
                   *->dGnTPLHlAakrgnlevvklLlqr<-*
                        +T LH A++ +++++ klL+++
     C11E4.6    61    SDFTLLHHAVLENQNQISKLLMDY    84

ank: domain 2 of 5, from 95 to 131: score 15.9, E = 0.01
                   *->dGnTPLHlAakrgnlevvklLlq....rGAdlnaqdd<-*
                          P HlAa +gnle+vk+Ll ++ ++ Ad+    +
     C11E4.6    95    KNILPIHLAAWNGNLEIVKMLLLqtmeKPADILNAVN    131

ank: domain 3 of 5, from 133 to 165: score 34.2, E = 5.9e-08
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                        +TPLHlA++r +levv +L+++ Ad+ +++
     C11E4.6   133    FNETPLHLAVQRCHLEVVFYLIKKNADPFIRNE    165

ank: domain 4 of 5, from 218 to 246: score 18.3, E = 0.002
                   *->PLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                      P HlAak++++e+++ L ++G ++n ++
     C11E4.6   218    PFHLAAKYNHVECMQALREHGFSINYTTE    246

ank: domain 5 of 5, from 249 to 278: score 26.1, E = 1.2e-05
                   *->TPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                      T+LH+A+ +g++e v++Ll+ G ++++++
     C11E4.6   249    TALHVASACGQAEAVRFLLEIGVNTDIKNQ    278

SAM: domain 1 of 2, from 890 to 899: score 1.8, E = 59
                   *->kIlssIqgLk<-*
                      kI+s+I++Lk
     C11E4.6   890    KIMSEIEKLK    899

SAM: domain 2 of 2, from 904 to 970: score 54.9, E = 4.5e-14
                   *->dnwsvesVgeWLesiglgqYkeyfdsfgynsidgvalltlteeDLkd
                      +   ++ V+eWL  igl+ Y+++f  +gy ++   + + ++   L++
     C11E4.6   904    SAGRFFYVSEWLNFIGLQDYISNFVGAGYKHMAKLTEIDWDTARLMQ 950

                   iGgvtllGHrkkIlssIqgLk<-*
                   +G vt++GH  ++l+s ++
     C11E4.6   951 LG-VTRPGHIARMLHSFKKAE    970

PID: domain 1 of 1, from 1023 to 1141: score 29.7, E = 3.5e-07
                   *->FeVkYLGsveVpkemrap.skstRmqvareairrlreavKkpkakki
                      +++  LG +e+ ++   + s++     a  a+ r++e+
     C11E4.6  1023    YRAHHLGVLEIGET---EcSDE-----AHAAMTRIKES--------- 1052

                   krskgssgerqagtkidLsistdglklldekteaekevihehplrkISFi
                           ++++  +++L ++  g++++de     k ++  + +++I+++
     C11E4.6  1053 ------IIDWETIPRVTLDLTCNGITIFDETF---KTLLDGYGVYTIRVV 1093

                   AvggDpdVdlraFayvrstddsliaadgatsrfaCHvFecekgkqlAedi
                    +  D++ dl +F +         +a ++ +rf CH F        A +i
     C11E4.6  1094 CQ--DRK-DLNFFCF---------VARDTENRFFCHTFCVLT-SGIAAEI 1130

                   aeavgqAFeva<-*
                   ++++g  Fe++
     C11E4.6  1131 ITTIGMMFELR    1141



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