Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C12C8.1
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Query: C12C8.1 CE08110 locus:hsp-70 heat shock protein 70 status:Partially_confirmed TR:O45246 protein_id:CAB03871.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSP70 Hsp70 protein 1299.8 0 1
UL35 Herpesvirus UL35 family 5.3 4 1
HI0933_like HI0933-like protein 4.2 5.7 1
Ski_Sno SKI/SNO/DAC family 3.9 7.2 1
Hydantoinase_A Hydantoinase/oxoprolinase 3.5 2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HI0933_like 1/1 79 99 .. 293 314 .. 4.2 5.7
Hydantoinase_A 1/1 189 210 .. 318 340 .. 3.5 2
Ski_Sno 1/1 298 313 .. 101 116 .] 3.9 7.2
UL35 1/1 374 398 .. 1 25 [. 5.3 4
HSP70 1/1 6 611 .. 1 620 [] 1299.8 0
Alignments of top-scoring domains:
HI0933_like: domain 1 of 1, from 79 to 99: score 4.2, E = 5.7
*->elaqLvnaikYhwtftvnGtep<-*
+++ +++ik hw+ftv+G+++
C12C8.1 79 DEETVQSDIK-HWPFTVKGKQG 99
Hydantoinase_A: domain 1 of 1, from 189 to 210: score 3.5, E = 2
*->lagfenPvIgFDmGGTSTDVsli<-*
+++++n +++FD GG ++DVs++
C12C8.1 189 ITDEKN-ILIFDLGGGTFDVSIL 210
Ski_Sno: domain 1 of 1, from 298 to 313: score 3.9, E = 7.2
*->ItrtDaerLcnallta<-*
Itr +e Lc++l +
C12C8.1 298 ITRARFEELCADLFRK 313
UL35: domain 1 of 1, from 374 to 398: score 5.3, E = 4
*->aaFDPSdPsTitlDtlraylpVdLl<-*
aa ++++s ++ Dt+++ l+Vd++
C12C8.1 374 AAVQAAVLSGVKDDTIKDVLLVDVV 398
HSP70: domain 1 of 1, from 6 to 611: score 1299.8, E = 0
*->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGERLV
+iGIDLGTT+ScV+++++gk+e++aN+eGn tTPS+VAFt++ ERLV
C12C8.1 6 AIGIDLGTTYSCVGIYQNGKVEILANSEGNKTTPSYVAFTDT-ERLV 51
GqaAKrQavtNpeNTvfsvKRlIGRrFddpeVqkdikhvPykvvkdsngd
G+aAK Qa++NpeNTvf++KRlIGRrFd+++Vq+dikh+P++v+ + g+
C12C8.1 52 GDAAKDQAARNPENTVFDAKRLIGRRFDEETVQSDIKHWPFTVKGK-QGK 100
awveveylGkkktftPeeISAmvLqKmKetAEayLGekVtkAVITVPAYF
++veve++G+k++f++eeISAmvLqKmKetAEa LG++V +AVITVPAYF
C12C8.1 101 PVVEVEVKGEKREFNAEEISAMVLQKMKETAEAVLGHSVRDAVITVPAYF 150
NDaQRQATKDAGkIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernil
ND+QRQATKDA++IAGLn +RIiNEPTAAALAYGLDK+ ++e+nil
C12C8.1 151 NDSQRQATKDAATIAGLNAIRIINEPTAAALAYGLDKGI----TDEKNIL 196
VfDLGGGTFDVSiLeigdG.VFEVkaTnGDThLGGeDFDnrlvdhlveeF
+fDLGGGTFDVSiL+i +G++FEVk+T+GDThLGGeDFD r++ h+ +eF
C12C8.1 197 IFDLGGGTFDVSILSIAEGsIFEVKSTAGDTHLGGEDFDSRVLQHFMTEF 246
kkkegiDlskDkrAlqRLreAAEKAKieLSsssqTeinLpfitadadGPk
k+k+g+D+s+++rA++RLr+A+E+AK++LSs +Te++ +++++++ G
C12C8.1 247 KRKTGKDISSNPRAIRRLRTACERAKRTLSS--STEATVEVDSLFD-G-T 292
hlsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGST
++++++tRA+FEeL+adLf++tlePvekaL+DAk +k IdeVvLVGGST
C12C8.1 293 DFYSKITRARFEELCADLFRKTLEPVEKALRDAKTDKGRIDEVVLVGGST 342
RIPkVqelVkefFGdGKePskgvNPDEAVAiGAAvQaGVLsG..seeVkD
RIPk+q+l+kefF+ GK+++ ++NPDEAVA GAAvQa+VLsG +++ kD
C12C8.1 343 RIPKIQKLLKEFFN-GKDLNCSINPDEAVAFGAAVQAAVLSGvkDDTIKD 391
vlLLDVtPLSLGIETlGGvmtklIeRNTTIPTkksqiFSTaaDNQtaVeI
vlL DV+PLS GIET+GGvmt lI+RNT IP+k s++F+T+aDNQ++V+I
C12C8.1 392 VLLVDVVPLSHGIETAGGVMTNLIDRNTRIPAKASKTFTTYADNQPGVSI 441
qVlQGERelakDNklLGrFeLdGIpPAPrGvPqIEVtFdIDANGIlnVsA
qV++GER++++DN++LG+FeL+GIpPAPrGvPq+ VtFdIDANGIlnVsA
C12C8.1 442 QVYEGERAMTRDNHRLGTFELTGIPPAPRGVPQVDVTFDIDANGILNVSA 491
kDkgtgkeqkItItnssgrLsddEIerMvkdAEkyaeeDkkrkeriEakN
+Dk+tg ++ ItI n++grLs+ +I+rMv++A ++ eD ++++ri +N
C12C8.1 492 ADKSTGRSNRITIRNEKGRLSQADIDRMVNEAKQFEREDAAQRDRISSRN 541
eaEsyvystekslkeeklgdklseadkekiekkvedaiewLkealegedd
++E+y+++++++l+e+ g+ ls++d++ +++ved+++w + + +
C12C8.1 542 QLEAYAFQVKQALEEH--GSLLSAEDAKRAKDAVEDTLRWMERN----TL 585
aekeeikakteeLqkvvqkigekmyq<-*
a+k+ei+ak +eL++++q+i +km+q
C12C8.1 586 ADKDEIEAKDKELKSICQDILTKMHQ 611