Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C13A10.3
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Query: C13A10.3 CE31305 status:Partially_confirmed TR:P91045 protein_id:AAB37940.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PID Phosphotyrosine interaction domain (PTB/PID) 64.3 6.2e-17 1
SH3 SH3 domain 41.7 8.2e-10 1
Adeno_PV Adenovirus minor core protein PV 1.6 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH3 1/1 46 102 .. 1 58 [] 41.7 8.2e-10
Adeno_PV 1/1 247 257 .. 124 134 .. 1.6 8.8
PID 1/1 167 261 .. 59 164 .] 64.3 6.2e-17
Alignments of top-scoring domains:
SH3: domain 1 of 1, from 46 to 102: score 41.7, E = 8.2e-10
*->pkvvALYDYeaeesdELsFkkGDvitvleksddgWWkgrlkgtgGke
p+ ++ ++ ++++dEL ++ GD ++v dd+W +g +++tg +
C13A10.3 46 PTHRVQSAFHPRHPDELLLEIGDAVHVDRTADDHWSYGTNLRTG-QS 91
GlvPsNYVepv<-*
G++P++ V ++
C13A10.3 92 GIFPASIVCEI 102
Adeno_PV: domain 1 of 1, from 247 to 257: score 1.6, E = 8.8
*->lgrasKRsYDE<-*
+gra+KRsYDE
C13A10.3 247 IGRAFKRSYDE 257
PID: domain 1 of 1, from 167 to 261: score 64.3, E = 6.2e-17
*->gtkidLsistdglklldektea.ekeviheh..plrkISFiAvggDp
++ ++++is +g+ ++d+ ++ ++ ++ l++ISF++ +p
C13A10.3 167 PQTVLMEISFRGIHVIDKRRKNfFQCPMFDFfySLQNISFCGA--HP 211
dVdlraFayvrstddsliaadgatsrfaCHvFecekgkqlAediaeavgq
+ l++F++ i++++ rfaCHvF+++ +++i+ea+g+
C13A10.3 212 K-QLKYFGF--------ITKHPLLPRFACHVFMSKN---TTQPIVEAIGR 249
AFevaYqeflra<-*
AF Y e+
C13A10.3 250 AFKRSYDEYMAF 261