hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C13B4.2
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Query:  C13B4.2  CE15615  locus:tgt-1 Queuine trna-ribosyltransferase status:Confirmed SW:Q17361 protein_id:CAB05785.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
UCH       Ubiquitin carboxyl-terminal hydrolase         354.0   5.1e-123   1
ubiquitin Ubiquitin family                               12.3      0.064   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
ubiquitin   1/1       2    73 ..     1    83 []    12.3    0.064
UCH         1/1      99   455 ..     1   456 []   354.0 5.1e-123

Alignments of top-scoring domains:
ubiquitin: domain 1 of 1, from 2 to 73: score 12.3, E = 0.064
                   *->mkifVKtldgkgkvtdgstitlevepsdTVlelKekIedkegippeq
                        ++VK+ + k        +++ev+ s     +K+++ + +++ pe+
     C13B4.2     2    PIVNVKWQKEK--------YVVEVDTSAPPMVFKAQLFALTQVVPER 40

                   QrLiyaGkvLreDdttLaeYniqegsftlhlvlrlr<-*
                   Q+++  G+ L   d   +   i+e+  t+++  +
     C13B4.2    41 QKVVIMGRTL--GDDDWEGITIKENM-TIMMMGSVG    73

UCH: domain 1 of 1, from 99 to 455: score 354.0, E = 5.1e-123
                   *->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsnrhylprinnsnp
                       +p+GL+NlGNTCY NS++Q+L  ++el+    +          ++
     C13B4.2    99    LYPCGLANLGNTCYFNSCVQMLKEVNELVLKPAEE---------MRI 136

                   lgskgqllcaladlfkslqsnqyssppseaelslfeSnavsalnknskpe
                   ++++ +l+  la+lf+sl   ++  ++++
     C13B4.2   137 REHNDRLCHNLATLFNSLRDKDRALRSKG--------------------- 165

                   esisPtqflktlgkinpsFselegykliqQqDAqEfllfLLdgLhEDlNr
                   e+i+P   + tl+ ++p+F    ++k   QqDA E+l++++ ++
     C13B4.2   166 EPIKPFAAILTLSDSFPQFE---KFK---QQDANECLVSIMSNVT----- 204

                   vakkpyneehepgldlaleeeeadelkdseaseeawknkstrneslisdl
                                                        +    + ++i  l
     C13B4.2   205 -------------------------------------RIYGLSGWNIESL 217

                   FqGqlesrikCaleCgkv.svtyepFldLslpikpkeasdspksLeecLk
                   F++q+e+++kC le ++v+++++e+ ++L++ +     +++++ L+ ++k
     C13B4.2   218 FRIQTETTMKC-LESDEVsEKKVERNNQLTCYV-----NQDVRFLQTGIK 261

                   aFtkeEiLKviegenkyyCdkcgkkqeasKklkisrLPpiLtihLkRFsy
                   a ++eE+    + ++    d+      ++K ++isrLP++Lt++++RF+y
     C13B4.2   262 AGFEEEMT---RNSEELNRDAK-----WQKNTQISRLPKYLTVNINRFFY 303

                   dgetssnimKindrvefPleeLDlspyln..q.k.tnkeraa.aean.sl
                   +++t+ n+ Ki ++v+fP++ LD +++++++++++   +ra  +++++ +
     C13B4.2   304 KESTKTNA-KILKSVQFPMQ-LDTYDLCSqeLkDkLVARRADiKLEEdAK 351

                   .eee.qqsvnade.gn.nq.ee.seestksqeegenpptkYeLvaVvvHs
                    e+e +++v  +e+g++++++   +++++ ++ g+n+++ Y+L +++ H+
     C13B4.2   352 lERElRKKVLDKEqGDkIFdDGvALPTAFEDDAGSNNSGFYDLKGIITHK 401

                   GsslsgGHYiayikkldnnkWykFDDsvetVgdwkvvsvvseeevlkesg
                   G+s++ GHY+a++++++++kW++FDD+  +V      +vv+ee +lk sg
     C13B4.2   402 GRSSQDGHYVAWMRSSEDGKWRLFDDE--HV------TVVDEEAILKTSG 443

                   ggtatseskrlkryrwAYiLFY<-*
                   gg+++s          AY+L+Y
     C13B4.2   444 GGDWHS----------AYVLLY    455

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