Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14A4.5
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Query: C14A4.5 CE02146 Prokaryotic ribonuclease PH status:Confirmed TR:Q17952 protein_id:CAA90109.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RNase_PH 3' exoribonuclease family, domain 1 38.4 8.3e-10 2
RNase_PH_C 3' exoribonuclease family, domain 2 6.4 2.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNase_PH 1/2 4 54 .. 1 57 [. 11.0 0.062
RNase_PH 2/2 71 122 .. 95 153 .] 27.4 1.2e-06
RNase_PH_C 1/1 125 176 .. 1 68 [. 6.4 2.3
Alignments of top-scoring domains:
RNase_PH: domain 1 of 2, from 4 to 54: score 11.0, E = 0.062
*->efRpieietGvlprQaaeGSalvelGddTkVlvtvtgeiepparrda
+R+ ++e+ +l++ a+GSa + G T + ++++g+ ++a++ +
C14A4.5 4 RLREMRCELSFLKN--ADGSACFSQG-ATCIWASCSGPGDVHASKAS 47
Qrllsleppl<-*
++ ++++
C14A4.5 48 ---DEAMTLD 54
RNase_PH: domain 2 of 2, from 71 to 122: score 27.4, E = 1.2e-06
*->rLidRalrpsrlidleklcIaGkpewqirvdvevLesdGstsdaain
++i+ +l i+le++ p ++i v+v+ +++dGs ++ain
C14A4.5 71 NIIHSTLSNA--INLELF-----PHTTISVTVHGIQDDGSMGAVAIN 110
AaslALadAgiP<-*
+a+ AL d g P
C14A4.5 111 GACFALLDNGMP 122
RNase_PH_C: domain 1 of 1, from 125 to 176: score 6.4, E = 2.3
*->gpvaavtvGlvddqdeTEelkndnseeildlDptyeEdsllsdldlv
++ ++v + +v+d e + +Dpt+++++ s++ +
C14A4.5 125 TVFCGVLIVRVKD-------------ELI-IDPTAKQEA-ASTGRVL 156
Vagt..edGkskrksivalqmdg<-*
+++ +++dG ++++a+++ g
C14A4.5 157 FSVCkgSDG---HPEVCAMDAIG 176