Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14B1.7
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Query: C14B1.7 CE28889 status:Partially_confirmed TR:Q17965 protein_id:CAA85489.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 458.4 6.1e-134 1
PAZ PAZ domain 102.0 4.3e-28 1
Clp_N Clp amino terminal domain 6.5 3.9 1
Nsp1_C Nsp1-like C-terminal region 4.9 5.9 1
FlgH Flagellar L-ring protein 3.2 6.7 1
OLF Olfactomedin-like domain 3.1 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
OLF 1/1 265 276 .. 283 294 .] 3.1 6
PAZ 1/1 241 325 .. 60 161 .] 102.0 4.3e-28
FlgH 1/1 371 403 .. 1 41 [. 3.2 6.7
Nsp1_C 1/1 486 510 .. 99 123 .] 4.9 5.9
Clp_N 1/1 656 669 .. 40 53 .] 6.5 3.9
Piwi 1/1 471 798 .. 1 341 [] 458.4 6.1e-134
Alignments of top-scoring domains:
OLF: domain 1 of 1, from 265 to 276: score 3.1, E = 6
*->ghllkYdvkLee<-*
+ +l Y++kL++
C14B1.7 265 YFQLQYNIKLKH 276
PAZ: domain 1 of 1, from 241 to 325: score 102.0, E = 4.3e-28
*->snpaplskFplkdnnGneegkeitvaeYFkekYnirLkypdlPllvv
+ +a++++F++k+++G+ +eitv++YF+ +Yni Lk+ lPl+v+
C14B1.7 241 FGNAETTSFMMKGDKGE---QEITVVQYFQLQYNIKLKHSRLPLVVS 284
ggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklferqtsalik
++++++ +++P+EL++i pgQr++ +++++++++ ++
C14B1.7 285 KRFKHE--------------SFFPMELLQIAPGQRIKVNKMSPTVQSSMT 320
kraqr<-*
++ ++
C14B1.7 321 GMNAS 325
FlgH: domain 1 of 1, from 371 to 403: score 3.2, E = 6.7
*->CaniqpvpeinkaptvspipspeqvpttpqlgvlfkqPahi<-*
+++++ +++ +++++ +p+++++ f qPahi
C14B1.7 371 ---PPAQIKFKNQTYMPEMSRPAFRTQD-----KFVQPAHI 403
Nsp1_C: domain 1 of 1, from 486 to 510: score 4.9, E = 5.9
*->dlLdplEeqvkeqsgtiylqhadee<-*
d+L ++Ee++ q +++ q +d
C14B1.7 486 DILKYYEESIGLQTIQVCQQTVDKM 510
Clp_N: domain 1 of 1, from 656 to 669: score 6.5, E = 3.9
*->dlkaLrqaieklrg<-*
d k+++++ie++rg
C14B1.7 656 DFKRVKEEIEEIRG 669
Piwi: domain 1 of 1, from 471 to 798: score 458.4, E = 6.1e-134
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
i++ ++ ++k+d+ +d++K++e+ ++ +++Q+++++++k++
C14B1.7 471 DILFAITREKKPDV----HDILKYYEESIGLQTIQVCQQTVDKMMGG 513
qGgrltltNvilkanmKlGGlNyklniekeprck.VC.N.e.mrviplkp
+Ggr+t++Nv++k+n+K+GG+N++ i+ ++r++ VC+N+e++ +++ ++
C14B1.7 514 GGGRQTIDNVMRKFNLKCGGTNFFDEIPSSVRGRaVCsNsEtLSKKLFEH 563
tliiGfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvr
+++iGf++sh++aRT+fDr++++ +++psv+gv++s+ ++t+++g+++
C14B1.7 564 VQFIGFEISHGAARTLFDRSRSQLDGEPSVVGVSYSLT--NSTQLGGFTY 611
lqpagqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsq
lq ++ ++l++l + + ++++s+++++r ++P rI++YR+G++EG+f++
C14B1.7 612 LQTQKEYKLQKLGE-VFPKCVQSYKEHSR-RLPTRIVIYRVGAGEGDFKR 659
vlnyEvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs
v++ E+++i+ +++k++++y+ P+l+v ++q ++h+R+F+s++ ++
C14B1.7 660 VKE-EIEEIRGTFDKIQPGYR---PHLVVVIAQIASHARVFPSNITGR-- 703
kakaqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdig
ka++qNvp+GT+VD++ ts++y +F+l+s ++++GTv+P++Yt+l +d++
C14B1.7 704 KAMEQNVPSGTCVDNVPTSYGYDEFILSSRTPLIGTVRPCKYTILINDAN 753
eyylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-
+s++e+++LTy ++ +q+++ p+s+P ++y+A +lAkrgrnn+k
C14B1.7 754 ---WSKNEIMHLTYFRAFGHQVSYKPPSVPDVLYAAENLAKRGRNNYK 798
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C14B1.7 - -