Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14B1.10
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Query: C14B1.10 CE28888 status:Partially_confirmed TR:Q9U3P9 protein_id:CAB63431.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily 38.3 2e-09 1
DsrH DsrH like protein 6.3 3.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DsrH 1/1 152 168 .. 82 98 .] 6.3 3.4
2OG-FeII_Oxy 1/1 217 322 .. 1 121 [] 38.3 2e-09
Alignments of top-scoring domains:
DsrH: domain 1 of 1, from 152 to 168: score 6.3, E = 3.4
*->LDsdFVdLtvkhdkvit<-*
L+ + VdL ++h++v++
C14B1.10 152 LEKELVDLVTNHPSVQS 168
2OG-FeII_Oxy: domain 1 of 1, from 217 to 322: score 38.3, E = 2e-09
*->naeslrvnyYppvPcpqelaskktsspdlglglgpHtDde....nri
+++++ n Y+ g+g++ H+D ++ +++i
C14B1.10 217 RPDQVTANVYE-----------------SGHGIPSHYDTHsafdDPI 246
lTillqlsdvdekdggggLqfpkdggwidvppgPgalvvniGdllqvlsn
++i+l ++ +++f++ ++++ P +++ + l+++ +
C14B1.10 247 VSISLL--------SDVVMEFKDG--ANSARIAP--VLLKARS-LCLIQG 283
GryksvlHrVlpntg...........egeRiSiafflrp<-*
+ +++++H++++++ + ++++++ ++ +R+S++++
C14B1.10 284 ESRYRWKHGIVNRKYdvdprtnrvvpRQTRVSLTLRKIR 322