Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14C11.4
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Query: C14C11.4 CE27683 status:Partially_confirmed TR:Q17976 protein_id:AAA96104.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF141 Domain of unknown function DUF141 61.4 8.3e-15 2
Paxillin Paxillin family 4.7 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF141 1/2 40 101 .. 20 92 .. 26.4 1.4e-05
Paxillin 1/1 323 339 .. 204 220 .] 4.7 1.2
DUF141 2/2 296 392 .. 1 133 [. 35.8 4.8e-08
Alignments of top-scoring domains:
DUF141: domain 1 of 2, from 40 to 101: score 26.4, E = 1.4e-05
*->isnpgfyPagwnessskippqfpanqnCswtinvPkGyyAkltlsak
++ + ++P+++ + p + an+ C++++ vPkG y++l + +
C14C11.4 40 LGSTIYIPENS---TT--PFEIRANFTCKYQFFVPKGTYLRLSVINS 81
ttisagddkddsitvtdsngnlekvt<-*
+ d d+i ds+g++ +t
C14C11.4 82 LL-----D-KDYIEFADSVGYVRNLT 101
Paxillin: domain 1 of 1, from 323 to 339: score 4.7, E = 1.2
*->vSQGdvSSPQrvNaSeq<-*
+SQ d+S PQ+ aS+
C14C11.4 323 LSQLDISFPQQLPASQF 339
DUF141: domain 2 of 2, from 296 to 392: score 35.8, E = 4.8e-08
*->aagftCipggpitinkpvnisn.pgfyPagwnessskippqfpanqn
+++++C +++ i+ ++p+ +s++ ++y++ ++ + s +pq + +
C14C11.4 296 IEDEKC-EMR-IISGTPSPVSRrLLTYTPLSQLDIS--FPQQLPASQ 338
CswtinvPkGyyAkltlsakttisagddkddsitvtdsngnlekvtsntg
+++ + d++++++++ +++++ ++ +
C14C11.4 339 FTVELT---------------------DCSVYMILSKNMPANFYMAN--- 364
sdlespyyFvspkftinlstgnSVsndgnvtFgFsvq<-*
+ + y+F+ p+f ++ +++++ F s +
C14C11.4 365 DERI-GYVFT-PSFLDDF-------QTPVLNFTLSSN 392