Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14C6.5
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Query: C14C6.5 CE08160 status:Partially_confirmed TR:O44667 protein_id:AAB94263.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 72.1 3.9e-20 2
CC CC domain 54.0 2.7e-14 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CC 1/1 18 53 .. 1 36 [] 54.0 2.7e-14
ShTK 1/2 74 116 .. 1 44 [] 42.3 3.4e-11
ShTK 2/2 125 167 .. 1 44 [] 37.7 8.5e-10
Alignments of top-scoring domains:
CC: domain 1 of 1, from 18 to 53: score 54.0, E = 2.7e-14
*->ssssalsCKsptgPaifGvCpaGqVlvvgdrCCaak<-*
s++ +l+CKs+++P+++G Cp+G++++++++CC+++
C14C6.5 18 SAEIKLGCKSDPMPDANGKCPPGTTMITAGGCCPDN 53
ShTK: domain 1 of 2, from 74 to 116: score 42.3, E = 3.4e-11
*->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfCs
+C D+++p ++ sdC+ ++++ Cn p y+d+mk++CpkTCG+C+
C14C6.5 74 SCCDKINPKtgvSDCPGMKNY---CNYGP-YIDIMKDQCPKTCGYCG 116
<-*
C14C6.5 - -
ShTK: domain 2 of 2, from 125 to 167: score 37.7, E = 8.5e-10
*->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfCs
C+D+ +p ++ sdC+a+++l Cnn y d+mk++CpkTC f +
C14C6.5 125 ICRDKLNPTtgvSDCPARRNL---CNNGI-YHDVMKDQCPKTCDFKQ 167
<-*
C14C6.5 - -