Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C14C6.5
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Query:  C14C6.5  CE08160    status:Partially_confirmed TR:O44667 protein_id:AAB94263.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ShTK     ShTK domain                                     72.1    3.9e-20   2
CC       CC domain                                       54.0    2.7e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CC         1/1      18    53 ..     1    36 []    54.0  2.7e-14
ShTK       1/2      74   116 ..     1    44 []    42.3  3.4e-11
ShTK       2/2     125   167 ..     1    44 []    37.7  8.5e-10

Alignments of top-scoring domains:
CC: domain 1 of 1, from 18 to 53: score 54.0, E = 2.7e-14
                   *->ssssalsCKsptgPaifGvCpaGqVlvvgdrCCaak<-*
                      s++ +l+CKs+++P+++G Cp+G++++++++CC+++
     C14C6.5    18    SAEIKLGCKSDPMPDANGKCPPGTTMITAGGCCPDN    53

ShTK: domain 1 of 2, from 74 to 116: score 42.3, E = 3.4e-11
                   *->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfCs
                      +C D+++p ++ sdC+ ++++   Cn  p y+d+mk++CpkTCG+C+
     C14C6.5    74    SCCDKINPKtgvSDCPGMKNY---CNYGP-YIDIMKDQCPKTCGYCG 116

                   <-*

     C14C6.5     -     -

ShTK: domain 2 of 2, from 125 to 167: score 37.7, E = 8.5e-10
                   *->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfCs
                       C+D+ +p ++ sdC+a+++l   Cnn   y d+mk++CpkTC f +
     C14C6.5   125    ICRDKLNPTtgvSDCPARRNL---CNNGI-YHDVMKDQCPKTCDFKQ 167

                   <-*

     C14C6.5     -     -



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