Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14F11.5
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Query: C14F11.5 CE03986 locus:hsp-43 heat shock protein status:Partially_confirmed TR:Q17992 protein_id:AAA80366.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSP20 Hsp20/alpha crystallin family 54.2 1.2e-13 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HSP20 1/1 99 204 .. 1 115 [] 54.2 1.2e-13
Alignments of top-scoring domains:
HSP20: domain 1 of 1, from 99 to 204: score 54.2, E = 1.2e-13
*->aaaagpsdvkedkdafevklDVpGfkpeelkVkvednnvLvvsGehe
+ s+v +d+ +f+v +D +f pee+ Vk+ d+ +L+++G he
C14F11.5 99 EGIDVNSNVVNDDRRFAVDMDCYQFRPEEIQVKTLDD-TLMIEGRHE 144
reepieekddkylrherssreFsRkfrLPenvdpdkVkAslssnGVLtvt
i++kd +++ F+Rk++LP +vd + + +s +++G L+v+
C14F11.5 145 ---DIRDKD------NFTKMYFVRKYQLPRDVDFNSIQSSIDAKGRLQVE 185
vPKlepekdk...kertIqIs<-*
+ K + ++ er I+I
C14F11.5 186 AGK--FNNMAlqgRERMIPIE 204