Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C14F11.5
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Query:  C14F11.5  CE03986  locus:hsp-43 heat shock protein status:Partially_confirmed TR:Q17992 protein_id:AAA80366.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
HSP20    Hsp20/alpha crystallin family                   54.2    1.2e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HSP20      1/1      99   204 ..     1   115 []    54.2  1.2e-13

Alignments of top-scoring domains:
HSP20: domain 1 of 1, from 99 to 204: score 54.2, E = 1.2e-13
                   *->aaaagpsdvkedkdafevklDVpGfkpeelkVkvednnvLvvsGehe
                        +   s+v +d+ +f+v +D  +f pee+ Vk+ d+ +L+++G he
    C14F11.5    99    EGIDVNSNVVNDDRRFAVDMDCYQFRPEEIQVKTLDD-TLMIEGRHE 144

                   reepieekddkylrherssreFsRkfrLPenvdpdkVkAslssnGVLtvt
                       i++kd       +++  F+Rk++LP +vd + + +s +++G L+v+
    C14F11.5   145 ---DIRDKD------NFTKMYFVRKYQLPRDVDFNSIQSSIDAKGRLQVE 185

                   vPKlepekdk...kertIqIs<-*
                   + K      + ++ er I+I
    C14F11.5   186 AGK--FNNMAlqgRERMIPIE    204



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