Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14H10.1
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Query: C14H10.1 CE23542 Yeast YIL023C-like protein status:Partially_confirmed TR:Q17996 protein_id:CAA90736.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zip ZIP Zinc transporter 259.2 5.7e-74 1
CcmD Heme exporter protein D (CcmD) 6.9 3.4 1
Reticulon Reticulon 2.6 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CcmD 1/1 65 89 .. 29 53 .] 6.9 3.4
Reticulon 1/1 158 178 .. 144 164 .. 2.6 7.8
Zip 1/1 106 358 .. 1 363 [] 259.2 5.7e-74
Alignments of top-scoring domains:
CcmD: domain 1 of 1, from 65 to 89: score 6.9, E = 3.4
*->ivwsllarrrvlrelarleaReaRr<-*
i ++l+a++ vl e+ r+ea+e+++
C14H10.1 65 IHDPLRAHAMVLEEELRKEAAEIQK 89
Reticulon: domain 1 of 1, from 158 to 178: score 2.6, E = 7.8
*->yialvllFTvPvvYEKyqdqI<-*
++a+v+l+ +P +YE++++++
C14H10.1 158 LLADVFLHLLPEAYESNENHV 178
Zip: domain 1 of 1, from 106 to 358: score 259.2, E = 5.7e-74
*->lllkiyaifalllisligvllplllplmksavatttes.dlraskkl
+ +iya++ + l+ g l+++llp + + + +++ +++
C14H10.1 106 SATWIYALIGCSLVVSTGILPAFLLPANIH------VLlSSSQGQRR 146
lsfllaFAaGvlLgtaflHLLPealealeslclehtpwhdfpfhpdssna
l +ll+FA+G lL++ flHLLPea+e+ e + + +
C14H10.1 147 LNLLLGFAIGSLLADVFLHLLPEAYESNENHVS----------------I 180
glivllGfllfllvEklvtllkerkgghghshdhehshteeerhhkksss
gl+vl+G+l+f l+ kl+++ e+++ +++ h+
C14H10.1 181 GLCVLAGYLTFSLISKLASSEEEQHKASSSAHFL---------------- 214
eeaseehgsseapeessekekesdsqelelheqsghseeleessaehsdh
C14H10.1 - -------------------------------------------------- -
ketrviayllllglilHnffdGLAiGasfssstslgistflAvlfHelph
+++ayl+l++ i nf++GLA+G+sf +st++gi+t++++l+He+ph
C14H10.1 215 ---NACAYLNLFANIGDNFAHGLAVGSSFLVSTKFGIMTTITILLHEIPH 261
glGlgaiLlqagfsrkkAvfPWllnlllfAltapiGialGllissgasyg
+++++aiLl+a+f + A+ l +l ++A++ ++G +++l +
C14H10.1 262 EISDFAILLRADFGKTNAI---LAQL-TTAAFGVLGSLVAL--------H 299
asggadiasgillafsAGtFlYvAlvellPeelassksnssgqsdlklsl
+ + + ll+f+AG+Fl +Al+ellPe++a+ + ++ l
C14H10.1 300 LHTSNVPVIETLLPFTAGGFLNIALTELLPEISAETSP--------VEIL 341
lqllalllGfalMllia<-*
+ql+++++G+++M++++
C14H10.1 342 KQLVMIVTGVLTMSFLN 358