Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C16C10.12
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Query: C16C10.12 CE01492 ATP binding transport protein (White protein) status:Partially_confirmed SW:Q09466 protein_id:CAA86750.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 109.1 1.9e-30 1
UPF0079 Uncharacterised P-loop hydrolase UPF0079 8.3 0.59 1
OAR OAR domain 5.9 8.6 1
ATP-bind Conserved hypothetical ATP binding prote 5.9 1 1
PRK Phosphoribulokinase / Uridine kinase fam 5.6 1.5 1
Per1 Per1-like 5.4 1.5 1
RNA_helicase RNA helicase 4.3 3.6 1
DUP DUP family 4.3 7.5 1
GTP_CDC Cell division protein 3.5 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0079 1/1 54 83 .. 1 33 [. 8.3 0.59
PRK 1/1 69 84 .. 1 16 [. 5.6 1.5
GTP_CDC 1/1 74 85 .. 11 22 .. 3.5 5.3
RNA_helicase 1/1 70 88 .. 126 144 .. 4.3 3.6
ATP-bind 1/1 69 90 .. 1 22 [. 5.9 1
OAR 1/1 139 151 .. 9 21 .] 5.9 8.6
ABC_tran 1/1 67 233 .. 1 177 [. 109.1 1.9e-30
DUP 1/1 433 460 .. 1 31 [. 4.3 7.5
Per1 1/1 527 544 .. 1 20 [. 5.4 1.5
Alignments of top-scoring domains:
UPF0079: domain 1 of 1, from 54 to 83: score 8.3, E = 0.59
*->TlnLgkrlAqlLkdkpGdVvlLsGDLGAGKTtf<-*
++L r+ + kpG++v L G GAGKTt+
C16C10.12 54 -KQLLNRVSGIA--KPGEMVALMGASGAGKTTL 83
PRK: domain 1 of 1, from 69 to 84: score 5.6, E = 1.5
*->vIGvaGsSGaGKTtva<-*
++ G+SGaGKTt +
C16C10.12 69 MVALMGASGAGKTTLM 84
GTP_CDC: domain 1 of 1, from 74 to 85: score 3.5, E = 5.3
*->GeSGLGKtTlIN<-*
G+SG GKtTl+N
C16C10.12 74 GASGAGKTTLMN 85
RNA_helicase: domain 1 of 1, from 70 to 88: score 4.3, E = 3.6
*->vylhGaPGqGKSllanvla<-*
v l Ga+G GK++l+nvl+
C16C10.12 70 VALMGASGAGKTTLMNVLM 88
ATP-bind: domain 1 of 1, from 69 to 90: score 5.9, E = 1
*->ailViGpAGSGKSTfcgalyqh<-*
+ +G G+GK+T+++ l+++
C16C10.12 69 MVALMGASGAGKTTLMNVLMCR 90
OAR: domain 1 of 1, from 139 to 151: score 5.9, E = 8.6
*->AaLRlKAKEHsaa<-*
A LR+KA +H+
C16C10.12 139 ARLRMKANKHTRR 151
ABC_tran: domain 1 of 1, from 67 to 233: score 109.1, E = 1.9e-30
*->GevlalvGpNGaGKSTLLklis.....GllppteGtilldGardlsd
Ge++al+G +GaGK+TL++++ ++ +Gl++ +Gt++++G +
C16C10.12 67 GEMVALMGASGAGKTTLMNVLMcrnmkGLEK--NGTVKVNG----TK 107
lsklkerlerlrknigvvfQdptlfpnpeltvreniafglrlslglskde
++ ++++++ g+ Q+ +++p +ltv e +++ +rl ++++k+
C16C10.12 108 IG---KEISLIS---GFAQQQEIFIP--TLTVDEYLMIQARLRMKANKHT 149
qrdrlkkagaeelLerlglgy..dhlldrr..pgtLSGGqkQRvaiARaL
+r+r ++e++e+l+l + +d +++ ++ +++ SGG+ +R+ A+ L
C16C10.12 150 RRER-----VDEIIEMLRLQNcrDLKIGTPglVKGISGGEARRLTFACEL 194
ltkpklLlLDEPTagLDpasraqllellrelrqqggTvl<-*
l +p lL++DEPT+gLD a + ++l+ l g+T++
C16C10.12 195 LSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGRTLI 233
DUP: domain 1 of 1, from 433 to 460: score 4.3, E = 7.5
*->ivlfinvsrcllvllvvslflvliflllvvi<-*
+v+++++sr +l+++ lf + ++l++v++
C16C10.12 433 YVISYYISR---FLSYLPLFTIDGALMIVIS 460
Per1: domain 1 of 1, from 527 to 544: score 5.4, E = 1.5
*->qePLylklfrWDCqsdCrYe<-*
P+y ++ +W s+CrY+
C16C10.12 527 NFPVYIRWMQW--TSWCRYG 544