Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C16C10.12
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Query:  C16C10.12  CE01492   ATP binding transport protein (White protein) status:Partially_confirmed SW:Q09466 protein_id:CAA86750.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
ABC_tran     ABC transporter                            109.1    1.9e-30   1
UPF0079      Uncharacterised P-loop hydrolase UPF0079     8.3       0.59   1
OAR          OAR domain                                   5.9        8.6   1
ATP-bind     Conserved hypothetical ATP binding prote     5.9          1   1
PRK          Phosphoribulokinase / Uridine kinase fam     5.6        1.5   1
Per1         Per1-like                                    5.4        1.5   1
RNA_helicase RNA helicase                                 4.3        3.6   1
DUP          DUP family                                   4.3        7.5   1
GTP_CDC      Cell division protein                        3.5        5.3   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
UPF0079        1/1      54    83 ..     1    33 [.     8.3     0.59
PRK            1/1      69    84 ..     1    16 [.     5.6      1.5
GTP_CDC        1/1      74    85 ..    11    22 ..     3.5      5.3
RNA_helicase   1/1      70    88 ..   126   144 ..     4.3      3.6
ATP-bind       1/1      69    90 ..     1    22 [.     5.9        1
OAR            1/1     139   151 ..     9    21 .]     5.9      8.6
ABC_tran       1/1      67   233 ..     1   177 [.   109.1  1.9e-30
DUP            1/1     433   460 ..     1    31 [.     4.3      7.5
Per1           1/1     527   544 ..     1    20 [.     5.4      1.5

Alignments of top-scoring domains:
UPF0079: domain 1 of 1, from 54 to 83: score 8.3, E = 0.59
                   *->TlnLgkrlAqlLkdkpGdVvlLsGDLGAGKTtf<-*
                       ++L  r+  +   kpG++v L G  GAGKTt+
   C16C10.12    54    -KQLLNRVSGIA--KPGEMVALMGASGAGKTTL    83

PRK: domain 1 of 1, from 69 to 84: score 5.6, E = 1.5
                   *->vIGvaGsSGaGKTtva<-*
                        ++ G+SGaGKTt +
   C16C10.12    69    MVALMGASGAGKTTLM    84

GTP_CDC: domain 1 of 1, from 74 to 85: score 3.5, E = 5.3
                   *->GeSGLGKtTlIN<-*
                      G+SG GKtTl+N
   C16C10.12    74    GASGAGKTTLMN    85

RNA_helicase: domain 1 of 1, from 70 to 88: score 4.3, E = 3.6
                   *->vylhGaPGqGKSllanvla<-*
                      v l Ga+G GK++l+nvl+
   C16C10.12    70    VALMGASGAGKTTLMNVLM    88

ATP-bind: domain 1 of 1, from 69 to 90: score 5.9, E = 1
                   *->ailViGpAGSGKSTfcgalyqh<-*
                       +  +G  G+GK+T+++ l+++
   C16C10.12    69    MVALMGASGAGKTTLMNVLMCR    90

OAR: domain 1 of 1, from 139 to 151: score 5.9, E = 8.6
                   *->AaLRlKAKEHsaa<-*
                      A LR+KA +H+
   C16C10.12   139    ARLRMKANKHTRR    151

ABC_tran: domain 1 of 1, from 67 to 233: score 109.1, E = 1.9e-30
                   *->GevlalvGpNGaGKSTLLklis.....GllppteGtilldGardlsd
                      Ge++al+G +GaGK+TL++++  ++ +Gl++  +Gt++++G    +
   C16C10.12    67    GEMVALMGASGAGKTTLMNVLMcrnmkGLEK--NGTVKVNG----TK 107

                   lsklkerlerlrknigvvfQdptlfpnpeltvreniafglrlslglskde
                   ++   ++++++    g+  Q+ +++p  +ltv e +++ +rl ++++k+
   C16C10.12   108 IG---KEISLIS---GFAQQQEIFIP--TLTVDEYLMIQARLRMKANKHT 149

                   qrdrlkkagaeelLerlglgy..dhlldrr..pgtLSGGqkQRvaiARaL
                   +r+r     ++e++e+l+l + +d +++ ++ +++ SGG+ +R+  A+ L
   C16C10.12   150 RRER-----VDEIIEMLRLQNcrDLKIGTPglVKGISGGEARRLTFACEL 194

                   ltkpklLlLDEPTagLDpasraqllellrelrqqggTvl<-*
                   l +p lL++DEPT+gLD    a + ++l+ l   g+T++
   C16C10.12   195 LSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGRTLI    233

DUP: domain 1 of 1, from 433 to 460: score 4.3, E = 7.5
                   *->ivlfinvsrcllvllvvslflvliflllvvi<-*
                      +v+++++sr   +l+++ lf + ++l++v++
   C16C10.12   433    YVISYYISR---FLSYLPLFTIDGALMIVIS    460

Per1: domain 1 of 1, from 527 to 544: score 5.4, E = 1.5
                   *->qePLylklfrWDCqsdCrYe<-*
                        P+y ++ +W   s+CrY+
   C16C10.12   527    NFPVYIRWMQW--TSWCRYG    544



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