Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C16C2.3
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Query:  C16C2.3  CE17405   inositol-1,4,5-triphosphate 5-phosphatase status:Partially_confirmed TR:O17590 protein_id:CAB02743.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa   149.4    6.1e-41   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Exo_endo_phos   1/1      97   410 ..     1   189 []   149.4  6.1e-41

Alignments of top-scoring domains:
Exo_endo_phos: domain 1 of 1, from 97 to 410: score 149.4, E = 6.1e-41
                   *->lkvltwNvnglra.l.l....llellr.edpDvlgLQEvkls.e.ll
                      ++v t+Nvng ++ +  +++  ++  +   ++ +gLQE++ls ++ +
     C16C2.3    97    ICVSTFNVNGRSPlSvFptwfSQKPEDiAEFYAVGLQEMDLSvGtYI 143

                   l.l.ll.gyy........................................
                    +++++ +++ +  + + +++++  +  ++ +  +         +++ +
     C16C2.3   144 IdNtKKmEGWvdaihcslpggrtqfnvvgsmrlvgifvivfqavnskvrv 193

                   .............gfgg.gggkgGvailsklpllsvilgidlirvistsg
                   ++ + ++  ++ ++ +++ g+kgG+a+ +k++                 +
     C16C2.3   194 sdvnvkyvatgisVLVNkLGNKGGTAVSMKMN-----------------D 226

                   t.fvvvntHlpag....deRlaqlaelldflsf.................
                   t +++vn+H++ag+++ ++R+++++++++++ f +++++++ ++++ + +
     C16C2.3   227 TwVCFVNAHFAAGnnelERRNQDFRDIYNDMVFyprsqqeglrdrplevp 276

                   .....ksdpvillGDfNarpdewds.lle.igk.................
                        ++d v+++GD+N+r++ + ++  ++  ++  ++++  +  ++ +
     C16C2.3   277 imclyDHDVVFWFGDLNYRLNTDMYgISNdEVRriassdkfadllqhcql 326

                   ..................igfppTywsyrgs.....sekkrtpsrlDril
                   +++  +++  ++ +++++ +f+pTy+++ g+++ ++sek+r+p+++Dril
     C16C2.3   327 reqmargtvfkdfeepstLPFRPTYKYDCGTntwdtSEKGRVPAWTDRIL 376

                   vsg.ll.rvvsl.ille....vlgSDHrPvlatl<-*
                   + ++  +    +  + ++ +++++SDH+Pv+a +
     C16C2.3   377 TFKkYPqVGLESiRPMVsidtITISDHKPVRAMF    410



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