Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C17G1.6
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Query: C17G1.6 CE31417 zinc metalloprotease status:Partially_confirmed TR:Q93243 protein_id:CAB01675.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Astacin Astacin (Peptidase family M12A) 367.0 3e-113 1
tsp_1 Thrombospondin type 1 domain 34.6 7.8e-09 1
EGF EGF-like domain 6.5 3.8 1
zf-MYND MYND finger 5.4 2.1 1
Chlam_OMP3 Chlamydia cysteine-rich outer membrane pro 2.8 6.7 1
Stig1 Stigma-specific protein, Stig1 1.9 7.5 1
AFOR_C Aldehyde ferredoxin oxidoreductase, domain 1.1 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AFOR_C 1/1 197 212 .. 462 478 .] 1.1 9.3
Astacin 1/1 122 309 .. 1 200 [] 367.0 3e-113
zf-MYND 1/1 303 314 .. 22 33 .. 5.4 2.1
Stig1 1/1 323 331 .. 85 93 .. 1.9 7.5
EGF 1/1 330 342 .. 28 45 .] 6.5 3.8
Chlam_OMP3 1/1 587 593 .. 52 58 .] 2.8 6.7
tsp_1 1/1 580 626 .. 1 53 [] 34.6 7.8e-09
Alignments of top-scoring domains:
AFOR_C: domain 1 of 1, from 197 to 212: score 1.1, E = 9.3
*->deenGvPtkEtLeeLGL<-*
d ++G+ + EtL LGL
C17G1.6 197 D-SLGIVSHETLHALGL 212
Astacin: domain 1 of 1, from 122 to 309: score 367.0, E = 3e-113
*->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
++Wpn + I Y++ + + +r+lir+A+rh e++ C +F++++
C17G1.6 122 NFWPNLT----ISYEFYGG-EETWRQLIRSAIRHVEQNVCFKFKENG 163
sagendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHElgH
g++d lr+++g+GCwS+VGr+ gG+ Q vS+g GCd++G+++HE++H
C17G1.6 164 --GDRDGLRYYRGNGCWSNVGRV-GGR-QLVSIG-YGCDSLGIVSHETLH 208
ALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYDYg
ALG+wHEQsR DRD+++sI+ + I +g e+nF+K++++++d+lG+PYD+g
C17G1.6 209 ALGLWHEQSRDDRDNFISIVADKITRGTEGNFAKRTAANSDNLGQPYDLG 258
SiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNklYn
S+MHYg+++F++++s++TI ++d++ yq+tiGQR+glSf D+k+iN++Y
C17G1.6 259 SVMHYGAKSFAYDWSSDTIKTRDWR-YQNTIGQRDGLSFKDAKMINTRY- 306
Cpe<-*
C++
C17G1.6 307 CSN 309
zf-MYND: domain 1 of 1, from 303 to 314: score 5.4, E = 2.1
*->narYCSkeCQrk<-*
n+rYCS CQr+
C17G1.6 303 NTRYCSNVCQRS 314
Stig1: domain 1 of 1, from 323 to 331: score 1.9, E = 7.5
*->SdrnNCGsC<-*
+d+nNCG+C
C17G1.6 323 TDPNNCGRC 331
EGF: domain 1 of 1, from 330 to 342: score 6.5, E = 3.8
*->tCeCppGdyylsytGkrC<-*
+C+Cp G y G +C
C17G1.6 330 RCRCPSG-----YGGTYC 342
Chlam_OMP3: domain 1 of 1, from 587 to 593: score 2.8, E = 6.7
*->sCskPCG<-*
+Cs+PCG
C17G1.6 587 ACSQPCG 593
tsp_1: domain 1 of 1, from 580 to 626: score 34.6, E = 7.8e-09
*->spWseWSpCSVTCG.kGirtRqRtcnspaPqkkggkpCtgdaqeEte
s W+eWS+CS +CG+ G++tR+R c + g++ C+g + e
C17G1.6 580 SAWGEWSACSQPCGgCGTKTRVRACYG------GNQVCPGSNLD-RE 619
aCmmdkC<-*
C+++ C
C17G1.6 620 SCNAHAC 626