Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C17G1.6
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Query:  C17G1.6  CE31417   zinc metalloprotease status:Partially_confirmed TR:Q93243 protein_id:CAB01675.2

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
Astacin    Astacin (Peptidase family M12A)              367.0     3e-113   1
tsp_1      Thrombospondin type 1 domain                  34.6    7.8e-09   1
EGF        EGF-like domain                                6.5        3.8   1
zf-MYND    MYND finger                                    5.4        2.1   1
Chlam_OMP3 Chlamydia cysteine-rich outer membrane pro     2.8        6.7   1
Stig1      Stigma-specific protein, Stig1                 1.9        7.5   1
AFOR_C     Aldehyde ferredoxin oxidoreductase, domain     1.1        9.3   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
AFOR_C       1/1     197   212 ..   462   478 .]     1.1      9.3
Astacin      1/1     122   309 ..     1   200 []   367.0   3e-113
zf-MYND      1/1     303   314 ..    22    33 ..     5.4      2.1
Stig1        1/1     323   331 ..    85    93 ..     1.9      7.5
EGF          1/1     330   342 ..    28    45 .]     6.5      3.8
Chlam_OMP3   1/1     587   593 ..    52    58 .]     2.8      6.7
tsp_1        1/1     580   626 ..     1    53 []    34.6  7.8e-09

Alignments of top-scoring domains:
AFOR_C: domain 1 of 1, from 197 to 212: score 1.1, E = 9.3
                   *->deenGvPtkEtLeeLGL<-*
                      d ++G+ + EtL  LGL
     C17G1.6   197    D-SLGIVSHETLHALGL    212

Astacin: domain 1 of 1, from 122 to 309: score 367.0, E = 3e-113
                   *->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
                      ++Wpn +    I Y++ +  +  +r+lir+A+rh e++ C +F++++
     C17G1.6   122    NFWPNLT----ISYEFYGG-EETWRQLIRSAIRHVEQNVCFKFKENG 163

                   sagendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHElgH
                     g++d lr+++g+GCwS+VGr+ gG+ Q vS+g  GCd++G+++HE++H
     C17G1.6   164 --GDRDGLRYYRGNGCWSNVGRV-GGR-QLVSIG-YGCDSLGIVSHETLH 208

                   ALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYDYg
                   ALG+wHEQsR DRD+++sI+ + I +g e+nF+K++++++d+lG+PYD+g
     C17G1.6   209 ALGLWHEQSRDDRDNFISIVADKITRGTEGNFAKRTAANSDNLGQPYDLG 258

                   SiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNklYn
                   S+MHYg+++F++++s++TI ++d++ yq+tiGQR+glSf D+k+iN++Y
     C17G1.6   259 SVMHYGAKSFAYDWSSDTIKTRDWR-YQNTIGQRDGLSFKDAKMINTRY- 306

                   Cpe<-*
                   C++
     C17G1.6   307 CSN    309

zf-MYND: domain 1 of 1, from 303 to 314: score 5.4, E = 2.1
                   *->narYCSkeCQrk<-*
                      n+rYCS  CQr+
     C17G1.6   303    NTRYCSNVCQRS    314

Stig1: domain 1 of 1, from 323 to 331: score 1.9, E = 7.5
                   *->SdrnNCGsC<-*
                      +d+nNCG+C
     C17G1.6   323    TDPNNCGRC    331

EGF: domain 1 of 1, from 330 to 342: score 6.5, E = 3.8
                   *->tCeCppGdyylsytGkrC<-*
                      +C+Cp G     y G +C
     C17G1.6   330    RCRCPSG-----YGGTYC    342

Chlam_OMP3: domain 1 of 1, from 587 to 593: score 2.8, E = 6.7
                   *->sCskPCG<-*
                      +Cs+PCG
     C17G1.6   587    ACSQPCG    593

tsp_1: domain 1 of 1, from 580 to 626: score 34.6, E = 7.8e-09
                   *->spWseWSpCSVTCG.kGirtRqRtcnspaPqkkggkpCtgdaqeEte
                      s W+eWS+CS +CG+ G++tR+R c +      g++ C+g   +  e
     C17G1.6   580    SAWGEWSACSQPCGgCGTKTRVRACYG------GNQVCPGSNLD-RE 619

                   aCmmdkC<-*
                    C+++ C
     C17G1.6   620 SCNAHAC    626



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