Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C17G10.4a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C17G10.4a CE30868 locus:dhs-6 status:Confirmed TN:AAM54205 protein_id:AAM54205.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 57.4 2.7e-15 1
DSPc Dual specificity phosphatase, catalytic 47.1 7e-12 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSPc 1/2 112 135 .. 120 143 .. 5.2 3.4
Y_phosphatase 1/1 224 343 .. 104 274 .] 57.4 2.7e-15
DSPc 2/2 279 347 .. 97 172 .] 41.7 2.2e-10
Alignments of top-scoring domains:
DSPc: domain 1 of 2, from 112 to 135: score 5.2, E = 3.4
*->SAtliiAYLMktrnlslneAysfv<-*
+A++ AYL+ ++++s+++Ay v
C17G10.4a 112 TAYVLGAYLIIYQGFSADDAYLKV 135
Y_phosphatase: domain 1 of 1, from 224 to 343: score 57.4, E = 2.7e-15
*->ggsltyGditVtlvseekk.......ddddytvRtleltn.gdeskn
+ + +y d++ +++ ++++ + ++ d +++t + + + +
C17G10.4a 224 HAPDVYFDYFRENKVSTIVrlnaknyDASKFTKAGFDHVDlFF---- 266
eakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqen
D ++P++ +l+f++ v+++++
C17G10.4a 267 ----------------------IDGSTPSD--EIMLKFIKVVDNTKG--- 289
esgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvi
+ VHC+AG GRTGt+i +++++++ g +
C17G10.4a 290 -----------------GVAVHCKAGLGRTGTLI----ACWMMKEYGLT- 317
difdivkelRsqRpgmVQteeQYiFiydaile<-*
+++ +lR +Rpg+V ++Q + i e
C17G10.4a 318 -AGECMGWLRVCRPGSVIGPQQPYLI-----E 343
DSPc: domain 2 of 2, from 279 to 347: score 41.7, E = 2.2e-10
*->dFIdkarqkggkVLVHCqAGiSRSAtliiAYLMktrnlslneAysfv
+FI + + g V VHC+AG+ R++tli++++Mk ++l++ e++ +
C17G10.4a 279 KFIKVVDNTKGGVAVHCKAGLGRTGTLIACWMMKEYGLTAGECMGWL 325
yvYhikerRcpiisPNfgFmrQLieyerk<-*
+ R p+ + ++ Lie ++
C17G10.4a 326 -----RVCR-PGSVIG-PQQPYLIEKQKF 347