hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C18B2.4
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Query:  C18B2.4  CE04043    status:Confirmed TR:Q18075 protein_id:AAK39174.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
GRAM     GRAM domain                                     48.2    1.3e-12   1
DUF238   Archaebacterial proteins of unknown function     4.6        4.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF238     1/1      31    51 ..    63    84 .]     4.6      4.9
GRAM       1/1      23    84 ..     1    86 []    48.2  1.3e-12

Alignments of top-scoring domains:
DUF238: domain 1 of 1, from 31 to 51: score 4.6, E = 4.9
                   *->LgivdrevPitgrkskkgeyri<-*
                      L+++++ vP++++ +k g  ++
     C18B2.4    31    LKFEKYNVPAFKS-TKSGALYL    51

GRAM: domain 1 of 1, from 23 to 84: score 48.2, E = 1.3e-12
                   *->ekfrkhFkeilppeEkLiadckkeVtysCplqrsfreeskipvqGrl
                      + ++++ k  l       ++      y+ p ++s       +++G+l
     C18B2.4    23    LLYTTNVK--LK-----FEK------YNVPAFKS-------TKSGAL 49

                   YlTnnrlcFrSdllgdltkegviklviPladiesvekek<-*
                   YlT++r++F+++  +d++k    ++ +P++++++v+ e+
     C18B2.4    50 YLTSHRIIFMNESKKDEFK----SFAMPFNSVRDVKLEQ    84

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