Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C18E3.5
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Query: C18E3.5 CE27713 beta transducin status:Partially_confirmed TR:O02097 protein_id:AAK68197.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 186.4 4.6e-52 7
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/7 26 64 .. 1 39 [] 29.5 1.4e-06
WD40 2/7 69 107 .. 1 39 [] 41.1 6.7e-10
WD40 3/7 111 150 .. 1 39 [] 34.6 4.9e-08
WD40 4/7 167 191 .. 14 39 .] 12.4 0.1
WD40 5/7 195 233 .. 1 39 [] 35.1 3.5e-08
WD40 6/7 263 283 .. 18 39 .] 13.8 0.04
WD40 7/7 287 325 .. 1 39 [] 29.3 1.5e-06
Alignments of top-scoring domains:
WD40: domain 1 of 7, from 26 to 64: score 29.5, E = 1.4e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +l+gH + ++ fs d g++las++ D i lW+
C18E3.5 26 MAPTMVLqGHGGEIYTSQFSSD-GSFLASAGYDQQIFLWN 64
WD40: domain 2 of 7, from 69 to 107: score 41.1, E = 6.7e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+e a+l+gH+++++ v+f+ d +++l+s++ D+t+++Wd
C18E3.5 69 CENFAVLkGHKGAIMEVKFNAD-SSHLVSAGTDKTVRVWD 107
WD40: domain 3 of 7, from 111 to 150: score 34.6, E = 4.9e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g+c++ ++ Ht+ v++v+++ ++++++s+S+Dgt+ + d
C18E3.5 111 GSCIRNFkSHTDIVNSVDVNRRGPQMICSASDDGTVMVHD 150
WD40: domain 4 of 7, from 167 to 191: score 12.4, E = 0.1
*->tcvafspdsgpylasgSrDgtiklWd<-*
t+v f+ +++g+ D+ ik+Wd
C18E3.5 167 TAVTFNDA-ADNVICGGIDNQIKVWD 191
WD40: domain 5 of 7, from 195 to 233: score 35.1, E = 3.5e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ ++l+gH +++t++++s++ g++l+s S D+++ Wd
C18E3.5 195 NDVRYVLsGHRDTITSLSVSHN-GNFLLSNSMDCSLMSWD 233
WD40: domain 6 of 7, from 263 to 283: score 13.8, E = 0.04
*->fspdsgpylasgSrDgtiklWd<-*
+sp +y+ gS+D+ +++W+
C18E3.5 263 WSPR-DNYITAGSADRFVYVWN 283
WD40: domain 7 of 7, from 287 to 325: score 29.3, E = 1.5e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ c++ l+gH ++v+c a +p +++l+s+++D+ti l +
C18E3.5 287 RACVYKLpGHLGSVNCTALHPT-QQILLSAGSDKTIFLGE 325