Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C18E3.6
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Query:  C18E3.6  CE27714   adenylyl cyclase-associated protein status:Partially_confirmed TR:O02096 protein_id:AAK68198.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CAP      CAP protein                                    391.6   7.6e-114   1
Melittin Melittin                                         6.6        2.2   1
Rop      Rop protein                                      3.1        7.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rop        1/1      56    65 ..    56    65 .]     3.1      7.8
Melittin   1/1     240   254 ..     1    15 [.     6.6      2.2
CAP        1/1      32   457 .]    85   552 .]   391.6 7.6e-114

Alignments of top-scoring domains:
Rop: domain 1 of 1, from 56 to 65: score 3.1, E = 7.8
                   *->LsAkvGdela<-*
                      LsAk+G++l
     C18E3.6    56    LSAKIGGDLN    65

Melittin: domain 1 of 1, from 240 to 254: score 6.6, E = 2.2
                   *->GiGAiLKvLatGLPa<-*
                      G+GA+L  L tGL a
     C18E3.6   240    GVGALLESLNTGLSA    254

CAP: domain 1 of 1, from 32 to 457: score 391.6, E = 7.6e-114
                   *->vEAdpasvkaFdslvakyispfvelSkklgGeVeeqaemVkkAfqae
                      v+A p  +  +d  + +++  f  lS k+gG++   + m  + f  +
     C18E3.6    32    VDATPQIINLYDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTH 78

                   ralLevAsqsqkPdqnSqtLlelLKPIseeiaevgtfREkNRsSklFNhL
                   r +L  A   +k d +  +++ l   +s ei    +f+EkNR S + Nh
     C18E3.6    79 RYFLWIACGRKKADND--EFATLVNDLSKEIVAFSDFKEKNRKSEFYNHI 126

                   SAvSEgipfLGWVaVePtPgpyVkeMkDsAqFYTNRvLKEfKesDpkqVd
                     +   ++ +GWVa   tP p++k+  D + FY NR+L E K++++ + +
     C18E3.6   127 CGLEAAVGGFGWVAEPKTPAPFIKDAIDTSVFYLNRILMEHKGKNDFHSE 176

                   WVksYLnllkeLqaYIKehHtTGLtWskkgpvaaaksAlpavsssapgaP
                   W+ks   l   L  Y+ +hHtTGL W+ +        A+p  +    gaP
     C18E3.6   177 WAKSIKELMLSLHEYVRQHHTTGLVWNSDP------GATPMCNRKSGGAP 220

                   SsadaaaaglPPPsGFaPPpPPPaspplvtdsvegkksdskgsrgAvFAe
                              PP    PPpPPP     ++   ++k+s    + gA+
     C18E3.6   221 ----------TPP----PPPPPP-----ISLIAPSKPS----GVGALLES 247

                   LNkGEgITsGLKKVtdDmkTHKNPeLRaqsgptssgLDPKpkikppaPkt
                   LN G + Ts LKKVt  m+THKNP LR   g+      +    k++
     C18E3.6   248 LNTGLSATSRLKKVTPEMQTHKNPVLREVNGQMNRK--TEE-RKVSEN-- 292

                   SpkPaekkkkkPavleLeGkKWfiENQenntelvIsetelkqsvYIfkCs
                    +kP +   +    +   Gk W +  Q++n++ v++ t++k+s+YI+kC
     C18E3.6   293 -KKPEKIHESS---IFWDGKIWKVDHQVGNKNAVVEVTDKKESIYIYKCN 338

                   nstvqIKGKVNsIslDnCkktsvVfDdvisifEvinckdvkiQVmgrvPt
                    s + IKGK N+I+lD+C ktsvVfD +++ +E+inc+ ++iQ  g +Pt
     C18E3.6   339 DSIIKIKGKANAITLDGCRKTSVVFDGLVAQCEIINCQSIQIQTLGELPT 388

                   ISIdKTDGcqIYLSkdSLesEIVtsKSSemNvliPkaedgdD.yvEfPiP
                    SI KTDGc+IYLS d+L+ +IV sKSSemN+  +  edgdD+y+E ++P
     C18E3.6   389 VSIQKTDGCHIYLSRDALNAQIVASKSSEMNISAML-EDGDDeYTEMALP 437

                   EQfKTswneaggKLvTevteha<-*
                   EQf T+    g KLvT   e+
     C18E3.6   438 EQFMTKIV--GKKLVTVASEIV    457



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