Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C18E3.6
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Query: C18E3.6 CE27714 adenylyl cyclase-associated protein status:Partially_confirmed TR:O02096 protein_id:AAK68198.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CAP CAP protein 391.6 7.6e-114 1
Melittin Melittin 6.6 2.2 1
Rop Rop protein 3.1 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Rop 1/1 56 65 .. 56 65 .] 3.1 7.8
Melittin 1/1 240 254 .. 1 15 [. 6.6 2.2
CAP 1/1 32 457 .] 85 552 .] 391.6 7.6e-114
Alignments of top-scoring domains:
Rop: domain 1 of 1, from 56 to 65: score 3.1, E = 7.8
*->LsAkvGdela<-*
LsAk+G++l
C18E3.6 56 LSAKIGGDLN 65
Melittin: domain 1 of 1, from 240 to 254: score 6.6, E = 2.2
*->GiGAiLKvLatGLPa<-*
G+GA+L L tGL a
C18E3.6 240 GVGALLESLNTGLSA 254
CAP: domain 1 of 1, from 32 to 457: score 391.6, E = 7.6e-114
*->vEAdpasvkaFdslvakyispfvelSkklgGeVeeqaemVkkAfqae
v+A p + +d + +++ f lS k+gG++ + m + f +
C18E3.6 32 VDATPQIINLYDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTH 78
ralLevAsqsqkPdqnSqtLlelLKPIseeiaevgtfREkNRsSklFNhL
r +L A +k d + +++ l +s ei +f+EkNR S + Nh
C18E3.6 79 RYFLWIACGRKKADND--EFATLVNDLSKEIVAFSDFKEKNRKSEFYNHI 126
SAvSEgipfLGWVaVePtPgpyVkeMkDsAqFYTNRvLKEfKesDpkqVd
+ ++ +GWVa tP p++k+ D + FY NR+L E K++++ + +
C18E3.6 127 CGLEAAVGGFGWVAEPKTPAPFIKDAIDTSVFYLNRILMEHKGKNDFHSE 176
WVksYLnllkeLqaYIKehHtTGLtWskkgpvaaaksAlpavsssapgaP
W+ks l L Y+ +hHtTGL W+ + A+p + gaP
C18E3.6 177 WAKSIKELMLSLHEYVRQHHTTGLVWNSDP------GATPMCNRKSGGAP 220
SsadaaaaglPPPsGFaPPpPPPaspplvtdsvegkksdskgsrgAvFAe
PP PPpPPP ++ ++k+s + gA+
C18E3.6 221 ----------TPP----PPPPPP-----ISLIAPSKPS----GVGALLES 247
LNkGEgITsGLKKVtdDmkTHKNPeLRaqsgptssgLDPKpkikppaPkt
LN G + Ts LKKVt m+THKNP LR g+ + k++
C18E3.6 248 LNTGLSATSRLKKVTPEMQTHKNPVLREVNGQMNRK--TEE-RKVSEN-- 292
SpkPaekkkkkPavleLeGkKWfiENQenntelvIsetelkqsvYIfkCs
+kP + + + Gk W + Q++n++ v++ t++k+s+YI+kC
C18E3.6 293 -KKPEKIHESS---IFWDGKIWKVDHQVGNKNAVVEVTDKKESIYIYKCN 338
nstvqIKGKVNsIslDnCkktsvVfDdvisifEvinckdvkiQVmgrvPt
s + IKGK N+I+lD+C ktsvVfD +++ +E+inc+ ++iQ g +Pt
C18E3.6 339 DSIIKIKGKANAITLDGCRKTSVVFDGLVAQCEIINCQSIQIQTLGELPT 388
ISIdKTDGcqIYLSkdSLesEIVtsKSSemNvliPkaedgdD.yvEfPiP
SI KTDGc+IYLS d+L+ +IV sKSSemN+ + edgdD+y+E ++P
C18E3.6 389 VSIQKTDGCHIYLSRDALNAQIVASKSSEMNISAML-EDGDDeYTEMALP 437
EQfKTswneaggKLvTevteha<-*
EQf T+ g KLvT e+
C18E3.6 438 EQFMTKIV--GKKLVTVASEIV 457