Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C18E3.5
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Query:  C18E3.5  CE27713   beta transducin status:Partially_confirmed TR:O02097 protein_id:AAK68197.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       186.4    4.6e-52   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      26    64 ..     1    39 []    29.5  1.4e-06
WD40       2/7      69   107 ..     1    39 []    41.1  6.7e-10
WD40       3/7     111   150 ..     1    39 []    34.6  4.9e-08
WD40       4/7     167   191 ..    14    39 .]    12.4      0.1
WD40       5/7     195   233 ..     1    39 []    35.1  3.5e-08
WD40       6/7     263   283 ..    18    39 .]    13.8     0.04
WD40       7/7     287   325 ..     1    39 []    29.3  1.5e-06

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 26 to 64: score 29.5, E = 1.4e-06
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                        ++ +l+gH + ++   fs d g++las++ D  i lW+
     C18E3.5    26    MAPTMVLqGHGGEIYTSQFSSD-GSFLASAGYDQQIFLWN    64

WD40: domain 2 of 7, from 69 to 107: score 41.1, E = 6.7e-10
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      +e  a+l+gH+++++ v+f+ d +++l+s++ D+t+++Wd
     C18E3.5    69    CENFAVLkGHKGAIMEVKFNAD-SSHLVSAGTDKTVRVWD    107

WD40: domain 3 of 7, from 111 to 150: score 34.6, E = 4.9e-08
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      g+c++ ++ Ht+ v++v+++  ++++++s+S+Dgt+ + d
     C18E3.5   111    GSCIRNFkSHTDIVNSVDVNRRGPQMICSASDDGTVMVHD    150

WD40: domain 4 of 7, from 167 to 191: score 12.4, E = 0.1
                   *->tcvafspdsgpylasgSrDgtiklWd<-*
                      t+v f+      +++g+ D+ ik+Wd
     C18E3.5   167    TAVTFNDA-ADNVICGGIDNQIKVWD    191

WD40: domain 5 of 7, from 195 to 233: score 35.1, E = 3.5e-08
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                       ++ ++l+gH +++t++++s++ g++l+s S D+++  Wd
     C18E3.5   195    NDVRYVLsGHRDTITSLSVSHN-GNFLLSNSMDCSLMSWD    233

WD40: domain 6 of 7, from 263 to 283: score 13.8, E = 0.04
                   *->fspdsgpylasgSrDgtiklWd<-*
                      +sp   +y+  gS+D+ +++W+
     C18E3.5   263    WSPR-DNYITAGSADRFVYVWN    283

WD40: domain 7 of 7, from 287 to 325: score 29.3, E = 1.5e-06
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      + c++ l+gH ++v+c a +p  +++l+s+++D+ti l +
     C18E3.5   287    RACVYKLpGHLGSVNCTALHPT-QQILLSAGSDKTIFLGE    325



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