Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C18H9.7
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Query: C18H9.7 CE01807 postsynaptic protein status:Partially_confirmed TR:Q09485 protein_id:AAC46691.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 21.1 1.3e-06 1
TPR TPR Domain 18.2 0.0022 5
PHD PHD-finger 6.7 0.56 1
zf-AN1 AN1-like Zinc finger 6.0 2.6 1
PspA_IM30 PspA/IM30 family 3.7 8.8 1
COX17 Cytochrome C oxidase copper chaperone (COX1 3.2 9.1 1
PWP2 Periodic tryptophan protein 2 WD repeat ass 2.9 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PWP2 1/1 53 75 .. 98 118 .] 2.9 7.4
TPR 1/5 83 105 .. 1 23 [. 9.4 0.76
TPR 2/5 121 147 .. 1 27 [. 7.3 2.9
TPR 3/5 161 194 .. 1 34 [] 2.3 79
TPR 4/5 245 263 .. 1 19 [. 1.0 1.9e+02
TPR 5/5 337 352 .. 1 16 [. 0.1 3.3e+02
zf-AN1 1/1 374 383 .. 1 10 [. 6.0 2.6
zf-C3HC4 1/1 374 417 .. 1 50 [] 21.1 1.3e-06
PHD 1/1 373 420 .. 1 51 [] 6.7 0.56
PspA_IM30 1/1 484 505 .. 219 241 .] 3.7 8.8
COX17 1/1 535 561 .. 1 27 [. 3.2 9.1
Alignments of top-scoring domains:
PWP2: domain 1 of 1, from 53 to 75: score 2.9, E = 7.4
*->lcdeNkY..tlryLLdvakqree<-*
lcd +Y+++l+y+L+++ ++ +
C18H9.7 53 LCDQGEYegMLSYALSQMQLATD 75
TPR: domain 1 of 5, from 83 to 105: score 9.4, E = 0.76
*->aeayynlGnaylklgkydeAiea<-*
ea+ nl+ ay++l ++ +A+++
C18H9.7 83 CEAFLNLAKAYERLADFTKALQY 105
TPR: domain 2 of 5, from 121 to 147: score 7.3, E = 2.9
*->aeayynlGnaylklgkydeAieayekA<-*
a+ +++a+l + ++++ +e +e A
C18H9.7 121 GYAHLTIALAHLGMSQFQQCLESFESA 147
TPR: domain 3 of 5, from 161 to 194: score 2.3, E = 79
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+++ lG ++ l + +A+ +++ AL++ +
C18H9.7 161 LQICVGLGSLFTLLRDITKALIFLRNALAIVQSV 194
TPR: domain 4 of 5, from 245 to 263: score 1.0, E = 1.9e+02
*->aeayynlGnaylklgkyde<-*
a++ + l+ +y++lg+ ++
C18H9.7 245 ARCMCSLADIYRELGESEA 263
TPR: domain 5 of 5, from 337 to 352: score 0.1, E = 3.3e+02
*->aeayynlGnaylklgk<-*
+++ +l+ +y +l++
C18H9.7 337 LKCHLRLAELYSQLND 352
zf-AN1: domain 1 of 1, from 374 to 383: score 6.0, E = 2.6
*->CdvCgKkvgL<-*
C++Cg++ gL
C18H9.7 374 CNFCGQRYGL 383
zf-C3HC4: domain 1 of 1, from 374 to 417: score 21.1, E = 1.3e-06
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls..gnttv
C C + + ++ + l C H f+++Cl ++l +++ +t
C18H9.7 374 CNFCGQRYGLKDES-LQALRCSHI-----FHEKCLHTYLLqrTDQT- 413
kCplC<-*
Cp C
C18H9.7 414 -CPKC 417
PHD: domain 1 of 1, from 373 to 420: score 6.7, E = 0.56
*->yCsvCgkvdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
+C +Cg+ ++ ++ lq C + fH +Cl l ++ + +Cp+
C18H9.7 373 FCNFCGQRYG-LKDESLQALRCSHIFHEKCLHTYLL--QRTDQTCPK 416
Ctpk<-*
C+++
C18H9.7 417 CRCR 420
PspA_IM30: domain 1 of 1, from 484 to 505: score 3.7, E = 8.8
*->giqkeveSsaedvLarLkaeqgk<-*
g++k++ ++++ LarLk++q+
C18H9.7 484 GAEKDI-DRVDRSLARLKSQQSA 505
[output cut off at A = 10 top alignments]