Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C23H3.4
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Query: C23H3.4 CE08323 aminotransferase status:Partially_confirmed TR:P91079 protein_id:AAK31446.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
aminotran_1_2 Aminotransferase class I and II 60.1 1.2e-15 2
CARD Caspase recruitment domain 8.7 0.5 1
DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase 8.0 0.17 1
arrestin Arrestin (or S-antigen), N-terminal d 5.5 4.6 1
LexA_DNA_bind LexA DNA binding domain 4.6 2.8 1
NAPRTase Nicotinate phosphoribosyltransferase 3.2 2.8 1
Vmethyltransf Viral methyltransferase 2.1 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LexA_DNA_bind 1/1 37 46 .. 1 10 [. 4.6 2.8
NAPRTase 1/1 11 50 .. 148 195 .. 3.2 2.8
Vmethyltransf 1/1 28 52 .. 1 25 [. 2.1 9.8
CARD 1/1 184 212 .. 62 90 .] 8.7 0.5
arrestin 1/1 254 285 .. 116 152 .] 5.5 4.6
aminotran_1_2 1/2 118 360 .. 1 267 [. 58.3 3.7e-15
DegT_DnrJ_EryC1 1/1 436 452 .. 391 407 .] 8.0 0.17
aminotran_1_2 2/2 439 455 .. 334 350 .] 1.5 21
Alignments of top-scoring domains:
LexA_DNA_bind: domain 1 of 1, from 37 to 46: score 4.6, E = 2.8
*->MkpLTeRQre<-*
+k+LTeRQ++
C23H3.4 37 SKKLTERQKD 46
NAPRTase: domain 1 of 1, from 11 to 50: score 3.2, E = 2.8
*->lfEtpLLaliseprtvatdpeadleqqlerlkkklkkllnetadrld
++Et+L+al ++ +++ ++++k+ kkl ++ +d+l+
C23H3.4 11 YIETLLVALLAYVVMRNR--------SKRQQEKLSKKLTERQKDELI 49
a<-*
a
C23H3.4 50 A 50
Vmethyltransf: domain 1 of 1, from 28 to 52: score 2.1, E = 9.8
*->qkrrkkvnvrfvLSeeqqniLrrlY<-*
+ +r++ +++++L+e q+ L++ +
C23H3.4 28 RSKRQQEKLSKKLTERQKDELIADW 52
CARD: domain 1 of 1, from 184 to 212: score 8.7, E = 0.5
*->kkGnqAfqiFlqaLretdqelladlllde<-*
+kG qA+ + +++++++d e+l+ lll++
C23H3.4 184 QKGLQASRSRVEYFKHNDMEHLERLLLEQ 212
arrestin: domain 1 of 1, from 254 to 285: score 5.5, E = 4.6
*->rYevkatldrptewkfdkkhkarskvftVirkldlns<-*
r+ v++++d++ w f + k + + V ++ ++ +
C23H3.4 254 RFKVRVFIDES--WSFGVIGK---TGRGVTEHFNVPM 285
aminotran_1_2: domain 1 of 2, from 118 to 360: score 58.3, E = 3.7e-15
*->klaggtrgpvGlndvrvdleqvlagtGalevaalfisaflapggtkl
+ +g+rg++G+ dv++dle +la + + e a l++ +f+ ++
C23H3.4 118 VGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSS--- 161
devlvpdPtypiysdvlnhaggidGvrlypyplrssnhnDfkaleeaLee
+ + + +++i+ d ++ ++ G++ ++ ++ ++hnD+++le++L e
C23H3.4 162 AIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRVEYFKHNDMEHLERLLLE 211
apeg..........kvvlvanPhNPtGtdltlaelekiadlakehPnill
+ + +++++++ +++ +++++ + +l++l+ki +++ + ++++
C23H3.4 212 QEQRdkkdpkkaksVRRFIVVEGLYV-NYADLCPLPKIIEFKWRF-KVRV 259
lvDEAYagfvfGgldedgasiaelldeypyanaenkdnllvvqsfSKnfG
++DE + +v G +g+++ e+++ + + ++ ++
C23H3.4 260 FIDESWSFGVIGK---TGRGVTEHFN-------------VPMEDVDMVMA 293
laGkRvGiiidiyangaaggivagsaasadrvssqlrallralysappav
+ ++ + gg+++g++ ++++ + +++++++++p+
C23H3.4 294 SLENALA---------STGGFCVGRSYVVGHQRLSGLGYCFSASLPPLLA 334
gaaivalilqdkernrerwldelkkmlglr<-*
aa +a++++d e + +++++m +++
C23H3.4 335 TAASEAISIIDEEP---SRVQKVTEM-AIN 360
DegT_DnrJ_EryC1: domain 1 of 1, from 436 to 452: score 8.0, E = 0.17
*->ypgltdeevdrVaeavr<-*
+++lt+ee++r ++a+r
C23H3.4 436 QHDLTEEEIQRAVDAIR 452
aminotran_1_2: domain 2 of 2, from 439 to 455: score 1.5, E = 21
*->lteetleelleairefl<-*
ltee+++++++air +
C23H3.4 439 LTEEEIQRAVDAIRVVA 455