Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C23H3.7
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Query: C23H3.7 CE31312 trehalase status:Partially_confirmed TR:Q9BI68 protein_id:AAK31441.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Trehalase Trehalase 416.0 3.4e-121 1
XPG_I XPG I-region 7.0 2 1
Bac_DNA_binding Bacterial DNA-binding protein 5.4 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
XPG_I 1/1 56 66 .. 94 104 .] 7.0 2
Bac_DNA_binding 1/1 131 147 .. 21 37 .. 5.4 7.6
Trehalase 1/1 82 609 .. 29 652 .] 416.0 3.4e-121
Alignments of top-scoring domains:
XPG_I: domain 1 of 1, from 56 to 66: score 7.0, E = 2
*->aiLlGcDYteG<-*
a+L G+DY++G
C23H3.7 56 AQLIGSDYFNG 66
Bac_DNA_binding: domain 1 of 1, from 131 to 147: score 5.4, E = 7.6
*->phLtKkdaeaavdavle<-*
+++tKkd++++vd++++
C23H3.7 131 EKITKKDVAEFVDEFFD 147
Trehalase: domain 1 of 1, from 82 to 609: score 416.0, E = 3.4e-121
*->iEctGplvhrvgmarllgdsktfvrGTYmLsnllqelt...ilksFG
i+c G+l+ v ++ l++dsktfv+ + + ++t+++i + F
C23H3.7 82 IYCSGKLLQTVMAVQLYPDSKTFVD-----QPMKENQTgksIMEHF- 122
RhqtfLDearnnenPvdrLerfvsdqFwnsLTRridlnNIaeiAkdteLe
+ f+ + + ++ + ++fv ++F+ +++eL+
C23H3.7 123 -EKRFP--VSIEKITKKDVAEFVDEFFD---------------KEGNELD 154
sWiDDqGkLhpgaknpwipvdfkep..pqylskivdkkmrpslaeeldyL
+ ++p ++q l+ i d + ++a+ l+ +
C23H3.7 155 V----------------CDLPDWRPitEQ-LANIKDASYQ-AFAQRLHFI 186
WpkLtrkvkKSvldkPellSLlplphPvnPstGEksLigyPYiVPGGRFn
W L r +k++v + P ++SL+++p +i PGGRF+
C23H3.7 187 WIQLCRQIKPEVKNDPSRFSLIYVPY--------------QFILPGGRFR 222
ElYYWDSYwimLGLLeSdktDtarGMveNFifeIehYGhIPNGNRsYYLs
E+YYWD+Ywi GL+ S+ tar M+ NF+++Ie+YG+ PNG+R+YYL
C23H3.7 223 EFYYWDAYWILKGLIASELYSTARMMILNFAHIIETYGFVPNGGRVYYLR 272
RSQPPlLTlMvllyvekTieeggeflrkyidtLkrElafWidGvEsLeyk
RSQPP+++ Mv y+ +T ++ + ++ i+ +++E+ fW +
C23H3.7 273 RSQPPFFAPMVYEYYLAT--QDIQLVADLIPVIEKEYTFWSE----RRTV 316
trwiavvrlddvtgLnRYhddgdGPRPESyyeDfetalklyaerdnnely
+++ ++ l + +Y + +PRPES eD+ +a ++ +
C23H3.7 317 NVTYEHPDLNETLHMFQYRTEAETPRPESFREDVLSAEHFTTKDRKKQFF 366
aDLksaAeSGkIkEWDfSsRWLhDravresGhLtslRteGvCAyliPVDL
DL saAeSG WDfSsRW+ + +++ t+ +++PVDL
C23H3.7 367 KDLGSAAESG----WDFSSRWFKNH-----KDISTIETT----NIVPVDL 403
NalLykaEqdiAnfskelgndeteDpyDgnntnkihaahWeelaeqRqea
Na+L+ ++ f+k gn+ W+ + +ea
C23H3.7 404 NAFLCYNMNIMQLFYKLTGNPLK-------------HLEWSSRFTNFREA 440
IekyLWDeedGiyyDYDlklekrrryfsasnlwPLWaglaskeqAaklae
+k+ + +yDY+l++ ++ f+asn +PL++ + + + ++ ++
C23H3.7 441 FTKVFYVPARKGWYDYNLRTLTHNTDFFASNAVPLFSQCYDPLNSQIAVD 490
kaleyLeesgGLValtypgGiptSl.vrtGeQWDyPNGWAPlQilaveGL
+ + sg a pgGiptS + +t +QWD+PNGW P+ +++eGL
C23H3.7 491 -VYNEMQNSG---AFSIPGGIPTSMnEETNQQWDFPNGWSPMNHMIIEGL 536
qnyGSerykevAreLAyrWLkavtkgFvdyNgkmvEKYDVtnGtgphGGG
+++ ++ A+ LA WL ++ ++F +m EKY+V g+ G
C23H3.7 537 RKSNNPILQQKAFTLAEKWLETNMQTFNVS-DEMWEKYNVKEPLGKLATG 585
GEYgvQGaDFKGVATeGFGWtNGVvLelLdlyg<-*
GEY+vQ GFGWtNG +L l+ y
C23H3.7 586 GEYEVQ---------AGFGWTNGAALDLIFTYS 609