Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C23H5.9
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Query: C23H5.9 CE17442 status:Confirmed TR:O61832 protein_id:AAC17537.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF398 Domain of unknown function (DUF398) 73.9 1.1e-18 1
GILT Gamma interferon inducible lysosomal thiol r 4.9 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GILT 1/1 128 154 .. 94 123 .] 4.9 6.1
DUF398 1/1 85 159 .. 1 86 [] 73.9 1.1e-18
Alignments of top-scoring domains:
GILT: domain 1 of 1, from 128 to 154: score 4.9, E = 6.1
*->firCiqgktknsealkdAvQkClkelgpek<-*
+++Ci+g+ ++ ++ d C+++ + ++
C23H5.9 128 LVTCIEGDHDFASSSTD---YCADGSQQQT 154
DUF398: domain 1 of 1, from 85 to 159: score 73.9, E = 1.1e-18
*->sddnkCndeeLrkimeenideakaspdfgpddlseskraIqkaaeke
s+d+kC d+eLrki+ ++++ +++ses+++I ++ +++
C23H5.9 85 SEDSKCTDPELRKIILNGVR----------TTTSESRDNIVASLKEK 121
Fgg.sFeVICsegdFsyvtntdgdlyCkvekdgvtClafk<-*
+ g ++ V C egd+ ++++++ +yC ++ +tC + k
C23H5.9 122 YAGvRYLVTCIEGDHDFASSST--DYCADGSQQQTCIVAK 159