Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C25A6.1
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Query:  C25A6.1  CE26795    status:Partially_confirmed TR:Q9BPP4 protein_id:AAK09067.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
Metallophos Calcineurin-like phosphoesterase             94.4    2.2e-24   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Metallophos   1/1      54   186 ..     1   124 []    94.4  2.2e-24

Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 54 to 186: score 94.4, E = 2.2e-24
                   *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
                      ++i v+gD+Hg+f dll+l++ ++ ++  ++lflGD+vdrg+ s+e+
     C25A6.1    54    APIKVCGDIHGQFPDLLRLFHRGgWpPTANYLFLGDYVDRGRFSIET 100

                   llllfalklkapgpvylvrGNHDfdsgnsvywelfleef.lllla.lvdg
                   + ll+a+k+k+pg+ +l+rGNH++ ++n+vy       f ++  ++   +
     C25A6.1   101 IVLLLAYKVKFPGNLFLLRGNHECEFVNKVY------GFyEECQKrYQSV 144

                   killvHgglspd.........leellk.ngvdlvirGHtH.p<-*
                   + + + +   +  + + +++ +++ + + ++dl++r+H+  +
     C25A6.1   145 RMFTAFQENNRGagcgfgrdaVLKVCSdFKLDLICRAHQVvQ    186



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