Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C25D7.2
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Query: C25D7.2 CE08388 status:Partially_confirmed TR:O17595 protein_id:CAB02773.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 113.3 5.9e-32 1
Viral_P18 ssRNA positive strand viral 18kD cysteine 4.4 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Viral_P18 1/1 98 126 .. 1 31 [. 4.4 6.9
MSP_domain 1/1 172 286 .] 1 138 [] 113.3 5.9e-32
Alignments of top-scoring domains:
Viral_P18: domain 1 of 1, from 98 to 126: score 4.4, E = 6.9
*->kakvkcvrKyRaevYkklglekeavkCkLna<-*
+++k++r +R + kk + +a+kC Ln+
C25D7.2 98 DKSSKSERSRRSSKSKKCDK--SAKKCDLNK 126
MSP_domain: domain 1 of 1, from 172 to 286: score 113.3, E = 5.9e-32
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+t++ pn+lpf+++gg +t+++ N++++r aFKvKt++n
C25D7.2 172 GTASVKTSTLRASPNKLPFATTGGVQTVSIANNTKSRKAFKVKTSDN 218
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
lYrV+Pv+G++ePg++++i v r++g+ k +d+++v
C25D7.2 219 LLYRVNPVFGFVEPGDKLSIDVL--------RHNGVEK-----TDHMIVL 255
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
+++a+se ++ a+ +f+++++++ ++ip+v++
C25D7.2 256 TSNASSEQNC------AKGVFESDQPRE----LTVIPLVVN 286