Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C25D7.1
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Query: C25D7.1 CE08387 status:Partially_confirmed TR:Q9U3P3 protein_id:CAB02771.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 88.3 1.3e-24 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 27 134 .. 1 138 [] 88.3 1.3e-24
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 27 to 134: score 88.3, E = 1.3e-24
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
l ++P+ + + + g+s ++++N ++kr+a Kv++ n+
C25D7.1 27 PLAIDPEEAK-LPNA--G-----GKSEHMVVNFTSKRMAIKVRCGNA 65
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
l+rV P++ i+eP+++++++++ r++g+++ kdK +vq
C25D7.1 66 -LFRVEPTHMIIEPNKCRQLTIN--------RMPGPIQ-----KDKAIVQ 101
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
yl ++ +++d ++ afkaa +ag ++ ++++++
C25D7.1 102 YLQIENDVQD------PKTAFKAADSAG--TKIPHLKIKLV 134