hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C26D10.2
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Query:  C26D10.2  CE03025  locus:hel-1 translation initiation factor eIF-4A status:Partially_confirmed SW:Q18212 protein_id:CAA91120.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
DEAD       DEAD/DEAH box helicase                       221.1    4.8e-67   1
helicase_C Helicase conserved C-terminal domain          96.2    7.1e-26   1
UPF0122    Putative helix-turn-helix protein, YlxM /      5.3        4.9   1
RWP-RK     RWP-RK domain                                  4.5        8.8   1
PDGF       Platelet-derived growth factor (PDGF)          3.8        6.5   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PDGF         1/1     116   129 ..     1    14 [.     3.8      6.5
DEAD         1/1      54   261 ..     1   207 []   221.1  4.8e-67
RWP-RK       1/1     249   271 ..     1    24 [.     4.5      8.8
UPF0122      1/1     258   282 ..    84   108 .]     5.3      4.9
helicase_C   1/1     307   378 ..     1    72 []    96.2  7.1e-26

Alignments of top-scoring domains:
PDGF: domain 1 of 1, from 116 to 129: score 3.8, E = 6.5
                   *->CktrttlveIfrey<-*
                      C tr+  + I++ey
    C26D10.2   116    CHTRELAFQISKEY    129

DEAD: domain 1 of 1, from 54 to 261: score 221.1, E = 4.8e-67
                   *->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
                      +a+ ++gfe+p+++Q e+ip +  g+Dv++qA+ G GKT++f++  l
    C26D10.2    54    RAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTL 100

                   eallkg...pqalvlaPTRELAnQiyeelkklgkgl.lrvalltgg...s
                   ++l + ++++ ++++++TRELA Qi +e ++++k+l+++++++  g+
    C26D10.2   101 QQLEPVdgeVSVVCMCHTRELAFQISKEYERFSKYLpGVKVAVFFGgmaI 150

                   kkeqrrklrkgpdilvaTPgrlldhlengkllekrlslknlkllVlDEAD
                   kk+++r+ ++ p+i+v+TPgr+l + ++g      l+l+++k++VlDE+D
    C26D10.2   151 KKDEERLANDCPHIVVGTPGRMLALARSG-----KLKLDKVKYFVLDECD 195

                   rmldmgkahgFgpdleeilsrlpknrqtllfSATlpneverlaklflknp
                    m++     + + d+ ei++++p + q+++fSATlp+e + + k+f+++p
    C26D10.2   196 KMIGD---ADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDP 242

                   vevs.vkse.ptplrikqk<-*
                    ev  +++ ++t++ ++q+
    C26D10.2   243 MEVYvDDEAkLTLHGLQQH    261

RWP-RK: domain 1 of 1, from 249 to 271: score 4.5, E = 8.8
                   *->kkadlsLeeLskyFdlsvkeAAks<-*
                       +a l+L+ L++++   +keA k+
    C26D10.2   249    DEAKLTLHGLQQHY-VKLKEAEKN    271

UPF0122: domain 1 of 1, from 258 to 282: score 5.3, E = 4.9
                   *->IkdkqlkdkqleqklkliqqldelE<-*
                      + +++ k+k+ e+  +l+ +ld lE
    C26D10.2   258    LQQHYVKLKEAEKNRRLLNLLDALE    282

helicase_C: domain 1 of 1, from 307 to 378: score 96.2, E = 7.1e-26
                   *->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
                      +++ +++h ++ qeeR    ++F++   ++LvaTd+++rG Di  vn
    C26D10.2   307    NFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVN 353

                   lVInydlpwnpesyiQRiGRaGRaG<-*
                    V+nyd+p + +sy++R+ RaGR+G
    C26D10.2   354 IVFNYDMPEDSDSYLHRVARAGRFG    378

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