Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C26E6.9a
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Query: C26E6.9a CE27735 locus:set-2 status:Partially_confirmed TR:Q95QU6 protein_id:AAK67214.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SET SET domain 166.2 5.6e-46 2
rrm RNA recognition motif. (a.k.a. RRM, RBD, 32.0 5.8e-08 1
Binary_toxA Clostridial binary toxin A 2.4 8.6 1
pec_lyase_N Pectate lyase, N terminus 1.8 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
rrm 1/1 128 199 .. 1 77 [] 32.0 5.8e-08
pec_lyase_N 1/1 532 537 .. 74 79 .] 1.8 9.9
Binary_toxA 1/1 941 953 .. 122 134 .] 2.4 8.6
SET 1/2 281 1222 .. 161 182 .. -27.6 5.9e+04
SET 2/2 1362 1491 .. 1 265 [] 179.7 4.8e-50
Alignments of top-scoring domains:
rrm: domain 1 of 1, from 128 to 199: score 32.0, E = 5.8e-08
*->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
+ N ++te L+d+ +++G+++ +++++ +et++++ +
C26E6.9a 128 VSLFNMDDNCTEVLLRDFAKDCGKVEKAYVCIH-----PETKRHMKM 169
aFVeFeseedAekAlealnGkelggrklrv<-*
a+V+F+++ +A + + ++ + l k++
C26E6.9a 170 AYVKFATVKEAHNFYSMYHAQNLLATKCTP 199
pec_lyase_N: domain 1 of 1, from 532 to 537: score 1.8, E = 9.9
*->sTRReL<-*
sTRReL
C26E6.9a 532 STRREL 537
Binary_toxA: domain 1 of 1, from 941 to 953: score 2.4, E = 8.6
*->sFiSTSlasvklS<-*
sF+STS+ s ++
C26E6.9a 941 SFSSTSIQSSPER 953
SET: domain 1 of 2, from 281 to 1222: score -27.6, E = 5.9e+04
*->Rafsl..........................................
++++++ ++++ + ++ ++++ ++++++++++++ + ++ + ++
C26E6.9a 281 YTMDHdvgpssmkmspippppikeesppppppppvasvsnlapvpsv 327
..................................................
+ + ++ ++++++ + ++ ++++++++ +++++ +++++++ +++++++
C26E6.9a 328 qlpyynniqpssstmhmpefrptepppsysredpyrstsrsslsrhrnrs 377
..................................................
++++++ +++++++++++++++++++++++ +++ + ++ + ++++ +
C26E6.9a 378 rspsdgmdrsgrsssrrthrrpesrngsknangdvvkyetykmekrkiky 427
..................................................
++++++ ++ + ++++ +++++ ++ ++++ +++++ ++ ++ +++++
C26E6.9a 428 eggnkkyeqvhikertavirgknqlenvssesasgsssvdtypdfsdeer 477
..................................................
+++++++++++++++++ + ++++++++++++++++++++++++++ ++
C26E6.9a 478 kkkkrpkspnrskkdsrafgwdstdesdedtrrrrsgrsqnrsserkfqt 527
..................................................
+++++++++ +++++++ ++ ++++++++++++++++ + +++ ++ +++
C26E6.9a 528 tsssstrrelssthtnsvpnlkshetppppppkghpsvhlqtpyqhvqpq 577
..................................................
+ + + ++++ +++ +++ ++ + ++++++ +++ ++ ++ + ++
C26E6.9a 578 mipatyynlppqhmapppittslppfcdfsqpppgftptfkpitnaplpt 627
..................................................
+ + ++ ++++ + + +++ ++ +++++++ + +++ ++ +++++
C26E6.9a 628 pyqasnipqpglvqiaalsaapepfssipgpppgpapiqedvgraespek 677
..................................................
++ +++ ++ ++++++++ + + + + + +++++++++++ ++ + + +
C26E6.9a 678 pslserfsgifgptqreepaqveveydyplkhseshddrhsledmdvevs 727
..................................................
+++++ ++ ++ + +++++++ ++ +++ ++ +++ ++ +++
C26E6.9a 728 sdgetvsnvekiecmeekkrqdleriaiartpivkkckkrmmdelsrkva 777
..................................................
++ +++ ++ +++ + + ++++++++++++ +++ ++++++
C26E6.9a 778 edirqqimrqcfaaldeklhlkaiadeekrkkereekarqeaekpsnhli 827
..................................................
+ + ++++ +++++ +++++ +++++++++++++ + + +++ ++
C26E6.9a 828 admmtlynnqsfasssrgfyrkqkpipkshpkhqehhhhakasvstpvhs 877
..................................................
++++++++ ++++++ ++++++++ ++ + +++++++++++++ ++++
C26E6.9a 878 sstsrnssvaptpqrtvstssssssaatsarvsedesdsdstpgevqrrk 927
..................................................
++ ++++++++ + ++++ +++++++++ ++++++++++++++ +++++
C26E6.9a 928 tsvlsndkrrrrasfsstsiqssperqrdvssssrtssssstssmkqeet 977
..................................................
++++++++ +++++++++++ ++ ++++++ +++++++++++++++
C26E6.9a 978 adeksrkrklimssdessttgstatsvvssrqsslepqqektdgeppkkk 1027
..................................................
++++ +++ ++ ++++++ +++ +++++ ++++ + + + ++ +
C26E6.9a 1028 sqtdfiservskiegeerplpepvetsgpiigdssylpykivhwekagii 1077
..................................................
+ + + ++ + ++ ++ ++++ + +++++++ + ++++ ++++++++
C26E6.9a 1078 emnlpansiraheyhpfttehcyfgiddprqpkiqifdhspcksepgsep 1127
..................................................
+ ++ + ++ ++ ++++ + + +++ +++++++++ ++++ +
C26E6.9a 1128 lkitpapwgpidnvaetgpliymdvvtapktvqkkqkprkqvfekdpyey 1177
.................................vegvnreeenseeelgl
++++++++ ++++ +++ ++++++++++ +++ e+++ +e++ +
C26E6.9a 1178 yeppptkrpappprfkktfkprseeekkkiigdC-----EDLPDLEDQWY 1222
<-*
C26E6.9a - -
SET: domain 2 of 2, from 1362 to 1491: score 179.7, E = 4.8e-50
*->vqkgrwarlegfkt...GwGlrAtedIpkGefiiEYpGelitseeae
++k r++ ++ ++++ +GwGl+A+e+I+++e+i EY+G i+s ae
C26E6.9a 1362 QLKFRKKMIKFARSrihGWGLYAMESIAPDEMIVEYIGQTIRSLVAE 1408
kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPkty
+re k y+++g++s+ Ylf++d
C26E6.9a 1409 ERE------KAYERRGIGSS--YLFRIDL--------------------- 1429
dsPlfWseeellLkGTllevdeeelkeykdllaeeievflqlklFpdvet
C26E6.9a - -------------------------------------------------- -
eefsyedylWaasivSRafslvegvnreeenseeelglviDatrkGNlaR
++viDat++GN+aR
C26E6.9a 1430 ------------------------------------HHVIDATKRGNFAR 1443
FiNHSCsPNcevqvvfvdgedlgtsseeetDAeekaglepgdprivifAl
FiNHSC+PNc+++v +++ g++rivi++
C26E6.9a 1444 FINHSCQPNCYAKVLTIE----------------------GEKRIVIYSR 1471
rdIkaGeELtydYgydlsnge<-*
Ik+GeE+tydY+ ++ +++
C26E6.9a 1472 TIIKKGEEITYDYK-FPIEDD 1491