Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C27A2.6
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Query: C27A2.6 CE27097 status:Partially_confirmed TR:Q18239 protein_id:AAK31465.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DIX DIX domain 180.1 3.5e-50 1
DEP Domain found in Dishevelled, Egl-10, and Ple 98.3 1.5e-25 1
PDZ PDZ domain (Also known as DHR or GLGF) 45.8 1.4e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DIX 1/1 101 184 .. 1 87 [] 180.1 3.5e-50
PDZ 1/1 362 447 .. 1 84 [] 45.8 1.4e-11
DEP 1/1 488 562 .. 1 82 [] 98.3 1.5e-25
Alignments of top-scoring domains:
DIX: domain 1 of 1, from 101 to 184: score 180.1, E = 3.5e-50
*->csetKViYhLDdEetPYlvkvpvpaervTLgdFKevLtkrngsYKYy
+++tKV++hLDd+e+PY+v+v+vp++++TL+d+K++L+++ ++KYy
C27A2.6 101 RTITKVYCHLDDQEHPYMVEVHVPPDCITLRDVKRKLMRT--NFKYY 145
fKslDpDfdCgvVKeEirdDsarLrPcfNgrvvswLvsve<-*
+++lDpD++ ++VK+E+rdDs+rL+P++Ngr++++L++ve
C27A2.6 146 CIALDPDTG-LEVKAEVRDDSRRLYPLKNGRFELYLLTVE 184
PDZ: domain 1 of 1, from 362 to 447: score 45.8, E = 1.4e-11
*->evtlekevkrgglGfsikggsdk....givvsevlpGsgaAeagGrL
+v+l + +lG++++g ++++++ g++v +++ ga + +Gr+
C27A2.6 362 TVRLNL--ETIPLGMTPSGHTNArgdaGLYVGDIQDR-GAVALDGRI 405
keGDvIlsvNGqdvenmsheravlaikgsgg.sevtLtvlRd<-*
+GD+I+++N ++ n s +av+++++++++ +tLt++
C27A2.6 406 DIGDMIVGINEISLGNYSNKEAVQLLREAVQrQYLTLTIAKT 447
DEP: domain 1 of 1, from 488 to 562: score 98.3, E = 1.5e-25
*->pesgvklkdrkwllkvipncFtGselVdWLmdnlsgvidrkeAlhla
+ sg+++kdr w+++ ip++F+G++lV+WL+++++g+++ k+A+++a
C27A2.6 488 EGSGLDIKDRYWFKIPIPMSFLGTDLVEWLVKHVQGLETKKKAREFA 534
qlLlkeGyirhvgdhltgkndhtFldkqtyYrfpd<-*
+ +lk+Gyir+ +++++F+ ++yY+++d
C27A2.6 535 EEMLKLGYIRPG------VGKQSFTK-ECYYVMGD 562