Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C27A7.5a
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Query: C27A7.5a CE20527 asparaginase status:Partially_confirmed TR:P90758 protein_id:CAB02791.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Asparaginase Asparaginase 191.5 1.8e-55 2
ank Ankyrin repeat 63.7 2.5e-16 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Asparaginase 1/2 126 136 .. 1 11 [. -1.7 1.3e+02
Asparaginase 2/2 191 465 .. 42 327 .] 191.4 2e-55
ank 1/4 520 544 .. 9 33 .] 2.0 88
ank 2/4 545 577 .. 1 33 [] 32.0 2.6e-07
ank 3/4 578 610 .. 1 33 [] 0.2 2.9e+02
ank 4/4 644 676 .. 1 33 [] 35.1 3.5e-08
Alignments of top-scoring domains:
Asparaginase: domain 1 of 2, from 126 to 136: score -1.7, E = 1.3e+02
*->TiAGtgasstn<-*
+++Gt++++t+
C27A7.5a 126 YTGGTIGMKTT 136
Asparaginase: domain 2 of 2, from 191 to 465: score 191.4, E = 2e-55
*->iHeqllnidSsdmtpedllklakaVnellqdkdvdGvVITHGTDTlE
i e+ + +dS dmt++d+ ++a++++ ++ ++d G+V++HGTDTl+
C27A7.5a 191 IVEYEPLLDSCDMTFDDWIRIATDIKKAYHKYD--GFVVLHGTDTLA 235
ETAfFLdltvktadKPvVvtGsmrPatavsADGpaNLynAvavAadkasr
+TA++L+++ ++++KPv++tGs++P ++v++DG+ NL +A+ +A + ++
C27A7.5a 236 YTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGALITAGNFDIP 285
grGVlVvfNdrilsgrdvtKtnassldaFdspnygyLGfisngkiyYsrt
+V V fN+ + +g++++K+ +s+l+aFdspn +L+ ++ i +++
C27A7.5a 286 --EVCVYFNNKLMRGNRTVKLDNSALEAFDSPNMHPLAQMAIN-IKVNYD 332
ptkphtsnsefdvskitesslPkVdIVyiyypdgdadalraalqagvkGI
+ + + f v+ e+ + +V+ + i p ++ +++ra+lq + +G
C27A7.5a 333 SIFRSDMVAAFTVH---ENLCRDVGMLRIF-PSMTIESVRAFLQPPTRGC 378
VlagvGnGnvpnsviatlekaeel.esGvvVVrssrvmsGgvdvgirnae
+l + G+Gn+p + +++++ + e +Gv VV+ s++ G v ++a
C27A7.5a 379 ILQTFGSGNMPTRRQDIIMALKEAiARGVMVVNCSQCLKGQ--VDVNYAT 426
nkddkkkgavasgyLnPekAriLLmlALtq.tsdsksvIqr<-*
+k + g++ + +++ e+A +L ++L++++ d++ +r
C27A7.5a 427 GKILYDIGVIPGSDMTSEAAMAKLCYVLGKdEWDLP--MKR 465
ank: domain 1 of 4, from 520 to 544: score 2.0, E = 88
*->AakrgnlevvklLlqrGAdlnaqdd<-*
Aak +++e++k L +G + a+d
C27A7.5a 520 AAKTNDVEILKSLKAAGVNFSATDY 544
ank: domain 2 of 4, from 545 to 577: score 32.0, E = 2.6e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+ +T+LH+Aa++g+le v +Ll+ G +++++d
C27A7.5a 545 NLRTALHVAASNGHLESVNYLLKIGTNVHIKDM 577
ank: domain 3 of 4, from 578 to 610: score 0.2, E = 2.9e+02
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G+ +L +A+k ++++ + ++G ++a
C27A7.5a 578 FGYNALVCAVKAKAMDCIIAIRDAGGFIDASAQ 610
ank: domain 4 of 4, from 644 to 676: score 35.1, E = 3.5e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
d +T+LH+Aa+ + +e+v++Llq+G +++ +dd
C27A7.5a 644 DNRTALHVAASLNKPEIVAYLLQCGLNPHEKDD 676