hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C27D8.1
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Query:  C27D8.1  CE18539   serine\/threonine kinase status:Partially_confirmed TR:Q93288 protein_id:CAB05633.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                           80.9    2.5e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1      24   176 ..     1   151 [.    80.9  2.5e-21

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 24 to 176: score 80.9, E = 2.5e-21
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkk.ekesikekrfl
                      y++++ lGeG+fG Vy++++  k++k+ A+K+ +k ek++ ++  +
     C27D8.1    24    YTVVRLLGEGGFGAVYLVQDN-KSKKQSAMKVERKiEKRKHSK--LK 67

                   rEiqilkrLs.HpNIvrligvfed.tddhlylvmEymegGdLfdylrrng
                   +Ei+ilk + + ++  ++ +    + ++ + lvmE++++ +L+d+  ++
     C27D8.1    68 MEIAILKLVGsGKHFTQIVDRGKKdKEGFFFLVMELVGK-SLADLKADRP 116

                   .gplsekeakkialQilrGleYLHsngivHRDLKpeN..ILldendgtvK
                   + ++s+   + +  Q l+++e LH  g++HRDLKp+N  + lde+++++
     C27D8.1   117 dKVFSFATGLGVSCQCLEAVEELHKTGFIHRDLKPQNyaCGLDEKRHNIY 166

                   iaDFGLArll<-*
                   i DFG+Ar++
     C27D8.1   167 ILDFGIARKY    176

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