Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C27F2.5
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Query: C27F2.5 CE26875 S. cerevisiae Snf8p status:Confirmed TR:Q18258 protein_id:AAK67217.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EAP30 EAP30 252.5 2.4e-75 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EAP30 1/1 91 256 .. 1 170 [] 252.5 2.4e-75
Alignments of top-scoring domains:
EAP30: domain 1 of 1, from 91 to 256: score 252.5, E = 2.4e-75
*->lLGmGDFYYELGVQvIEVClAtkhkNGGLisLeeLcrrLleeRgkfg
+LG GDFYYELG+Q++E+Cl t h NGG +++ee+++rL R +
C27F2.5 91 ALGFGDFYYELGIQIVEICLSTTHINGGIMTVEEIRNRLMRTRSRTR 137
vheevtedDvlRAikKLkvLGsGFvvikiGKGKylvrSvPlELNmDhnvv
+ ++ dD+lRA++KLkvLG+GF++ ++G G lv+SvP+EL+mDh v
C27F2.5 138 -KDTISTDDILRAVDKLKVLGNGFELVPLGGGRFLVQSVPGELSMDHSRV 186
LelAenteqGyVTvSelrknLaWereRaiQvLekLLeEGLaWIDnkqagg
L+lAe yVT + +++ L W + Ra +Le+L++EGLaW D qa +
C27F2.5 187 LQLAE--DAAYVTKELIIDKLRWDEARASSALEHLVKEGLAWTD-EQASD 233
EaaYWfPslfiddqaQeiaaeef<-*
YWfPslf + ++ +
C27F2.5 234 TTQYWFPSLFLQQYCHSSSSTSV 256