Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C28C12.10
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Query: C28C12.10 CE27740 status:Partially_confirmed TR:Q18284 protein_id:AAB37553.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FYVE FYVE zinc finger 102.7 1.5e-27 1
PH PH domain 57.2 1e-14 2
MtrG Tetrahydromethanopterin S-methyltransfera 8.0 0.82 1
RhoGEF RhoGEF domain 7.2 0.58 1
ATP-synt_DE ATP synthase, Delta/Epsilon chain, long a 4.4 8.4 1
pec_lyase_N Pectate lyase, N terminus 2.7 5 1
Tektin Tektin family 2.3 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pec_lyase_N 1/1 74 80 .. 73 79 .] 2.7 5
MtrG 1/1 380 392 .. 36 48 .. 8.0 0.82
RhoGEF 1/1 525 548 .. 184 207 .] 7.2 0.58
ATP-synt_DE 1/1 525 550 .. 27 52 .] 4.4 8.4
Tektin 1/1 638 650 .. 381 393 .] 2.3 6.6
PH 1/2 578 673 .. 1 85 [] 54.7 5.2e-14
FYVE 1/1 771 837 .. 1 72 [] 102.7 1.5e-27
PH 2/2 897 998 .. 1 85 [] 6.1 2.5
Alignments of top-scoring domains:
pec_lyase_N: domain 1 of 1, from 74 to 80: score 2.7, E = 5
*->NsTRReL<-*
N+TRR+L
C28C12.10 74 NTTRRSL 80
MtrG: domain 1 of 1, from 380 to 392: score 8.0, E = 0.82
*->EvaQriGKkvGRD<-*
E+ r+GK+vGRD
C28C12.10 380 EYMERFGKRVGRD 392
RhoGEF: domain 1 of 1, from 525 to 548: score 7.2, E = 0.58
*->dqpdredLkkaldllqdlaksiNe<-*
d++++e +++a+++l+++ + +N+
C28C12.10 525 DCDEKEKAQEAIQKLENVTQAVNQ 548
ATP-synt_DE: domain 1 of 1, from 525 to 550: score 4.4, E = 8.4
*->DdkekirAeaaLkrArARlkaakflk<-*
D ek++A++a+++ + +a+++++
C28C12.10 525 DCDEKEKAQEAIQKLENVTQAVNQKM 550
Tektin: domain 1 of 1, from 638 to 650: score 2.3, E = 6.6
*->rekCmqlRtslps<-*
r++C+q+R++ +s
C28C12.10 638 RIRCLQIRSRVKS 650
PH: domain 1 of 2, from 578 to 673: score 54.7, E = 5.2e-14
*->vikeGwLlkks.kswkkRyfvLfndvLlyykdsk.....kkpkgsip
+i++ +++k+++k+ ++Ry+vLf+d+L++++ s++++ + + ip
C28C12.10 578 LIRQSEVMKQTrKELQPRYLVLFTDYLWICRVSSsgqfdINRSYRIP 624
Lsgcqvek.pd...kncFeirt.drtlllqaeseeerkeWvkaiqsair<
L+ +++e+ +++++ +c++ir++ ++ l+ ++se+er++W +++ +a++
C28C12.10 625 LEYMKFERmEEderIRCLQIRSrVKSALIIFSSEKERNQWTDDLTKAQY 673
-*
C28C12.10 - -
FYVE: domain 1 of 1, from 771 to 837: score 102.7, E = 1.5e-27
*->phWvpDeevsnCmr..CgkpFtkltkRrHHCRaCGrifCgsCssktv
p+W+pD+ +++C +++C+++F+ +++RrHHCR+CG+++C++C +
C28C12.10 771 PVWLPDNISNECLMegCSTEFN-IINRRHHCRDCGWLICKFCKGQAP 816
llpylgiaaliekpvRVCdsCydrlnk<-*
l++y+ +++++VC++C+dr++k
C28C12.10 817 LSKYD------FTKQNVCSECFDRHYK 837
PH: domain 2 of 2, from 897 to 998: score 6.1, E = 2.5
*->vikeGwLlkks.kswkkRyfvLfn..dvLlyykdsk.kkpkgsipLs
i G ++++s+k+ + R++ L++++ L++yk + ++k + +
C28C12.10 897 SIVFGRVYLRSrKTETVRHALLRRddLKLVFYKAELdSKSVLELLIY 943
gcqvek.pd..kncFeirt.dr.........tlllqaeseeerkeWvkai
g+ +++p ++ Fe++++++ ++++++++++ ++ ++++++k+W +a+
C28C12.10 944 GYFYREtPLddGWLFELVHrNQirtddtkddVISFRVDNSASAKKWSAAF 993
qsair<-*
+ +
C28C12.10 994 ADKLE 998