Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C28H8.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C28H8.3 CE29195 status:Partially_confirmed SW:Q09475 protein_id:AAA62291.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DEAD DEAD/DEAH box helicase 47.4 1.3e-13 1
helicase_C Helicase conserved C-terminal domain 47.3 6e-12 1
invertase_neut Plant neutral invertase 7.4 0.15 1
Phenol_Hydrox Methane/Phenol/Toluene Hydroxylase 4.4 2.8 1
Arv1 Arv1-like family 3.6 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Arv1 1/1 644 662 .. 295 313 .] 3.6 5.1
DEAD 1/1 775 948 .. 1 178 [. 47.4 1.3e-13
invertase_neut 1/1 1019 1040 .. 486 505 .] 7.4 0.15
Phenol_Hydrox 1/1 1025 1051 .. 217 243 .] 4.4 2.8
helicase_C 1/1 1279 1351 .. 1 72 [] 47.3 6e-12
Alignments of top-scoring domains:
Arv1: domain 1 of 1, from 644 to 662: score 3.6, E = 5.1
*->gqistsvifdlaigslldf<-*
+q+ +svif+ ++s+ld+
C28H8.3 644 QQGKESVIFLNNLYSSLDL 662
DEAD: domain 1 of 1, from 775 to 948: score 47.4, E = 1.3e-13
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
k+ + + p Q++ ++ + +g l++ApT +GKT + +
C28H8.3 775 KKDDRVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFV-SYYCI 820
eallkg...pqalvlaPTRELAnQiyeelkklgkgl.lrvalltggskke
e++l+++++ ++++aP ++L+nQ+ + +++ +++++ + g+ +
C28H8.3 821 EKVLRSsdnDVVVYVAPSKALINQVCGSVYARFRNKsMKRGISLFGTLTQ 870
qrrklrkgpdilvaTPgrlldhlengkllekrlslknlkllVlDEADrml
+ + ++++l++ P+ l ++++++ + + + ++++k++V+DE++ +
C28H8.3 871 EYSQNAMQCQVLITVPECLQELMLSRTPAVQ-KFVSHIKYVVFDEVHSIG 919
dmgkahgFgpdleeilsrlpknrqtllfSATlpne<-*
+ ++e++l l ++++l++SAT+ n+
C28H8.3 920 AS----EESHIWEQLL--LLIQCPFLALSATIGNA 948
invertase_neut: domain 1 of 1, from 1019 to 1040: score 7.4, E = 0.15
*->PedAslldlEedkqL..kqalk<-*
Pe++ +++ +ed+qL+ +q+l+
C28H8.3 1019 PEKLRMFSIPEDQQLtaRQVLH 1040
Phenol_Hydrox: domain 1 of 1, from 1025 to 1051: score 4.4, E = 2.8
*->ssiqtDeaRHarwgdalvktalendea<-*
+si++D + +ar++ l+ +++e d+a
C28H8.3 1025 FSIPEDQQLTARQVLHLYNMMAEVDDA 1051
helicase_C: domain 1 of 1, from 1279 to 1351: score 47.3, E = 6e-12
*->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
+ ++++h+gl++ eR +++ Fr+g+ vL++T+ +++G++ p+ +
C28H8.3 1279 ERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKT 1325
lVInydl.pwnpesyiQRiGRaGRaG<-*
+++ d +p y Q++GRaGR G
C28H8.3 1326 VMFGVDTlQLTPLLYRQMSGRAGRRG 1351