hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C28H8.11
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C28H8.11  CE01822   tryptophan 2,3-dioxygenase status:Confirmed SW:Q09474 protein_id:AAA62299.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Trp_dioxygenase Tryptophan 2,3-dioxygenase              900.0     7e-267   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Trp_dioxygenase   1/1      22   371 ..     1   352 []   900.0   7e-267

Alignments of top-scoring domains:
Trp_dioxygenase: domain 1 of 1, from 22 to 371: score 900.0, E = 7e-267
                   *->dsaqqghndfsksFGllYgDYLqLDkllsAQrllSdadgkkvhDEHL
                      +++qqg+n+++++FG++Y++YLqLDk+l+AQrl+S+adg++v+DEHL
    C28H8.11    22    EECQQGVNKVEMGFGQTYSEYLQLDKILTAQRLKSEADGQRVDDEHL 68

                   FIvtHQayELWFkqIvfELdsvrrlLdngivdearntLkilkrLkRvVri
                   FIv+HQa+ELWFkqI+f+Ld+vr+lL+n+ivde++ tLki+++L+R+++i
    C28H8.11    69 FIVIHQAHELWFKQIIFDLDNVRKLLNNTIVDETK-TLKIVSGLDRMTKI 117

                   LelLtaqwtvLeTMTPlDFndFRsyLgpASGFQSlqfRlLEnkLGvksss
                   L+lLt+q+t+L+TM+PlDF+dFR+yL+pASGFQSlqfR+LEnkLGv++++
    C28H8.11   118 LSLLTEQITLLDTMSPLDFVDFRKYLTPASGFQSLQFRVLENKLGVRQER 167

                   RvkYNrkHYkevFedddlAielLlvpeeeksllhlvlawlertPGLesdg
                   R+kYN++HYk+vF+d+dl  ++L+v+eeeksll+l+++wlertPGL+s++
    C28H8.11   168 RIKYNAQHYKNVFNDTDL--KTLNVTEEEKSLLTLIESWLERTPGLKSTS 215

                   fn..FWgKFekSvydllarllakrglpvpaevlqrdLtaeYekaeeVlaS
                   ++++FW+K+ekSv+++la+l++++++p+++e+++++LtaeY+k++++++S
    C28H8.11   216 EDegFWIKYEKSVNKYLADLAKQAADPSNTEEIAKQLTAEYHKTADAFQS 265

                   wldekrHdalvakGeRrLshkAlqGAlMIyfYrdeprfsqpyqLleaLmD
                   +ld+++H++++++G+R+Lsh+A++GA+MIyfYrd+prfsqpyq+l++LmD
    C28H8.11   266 ILDPRQHEQHIRNGNRLLSHDATKGAMMIYFYRDMPRFSQPYQILTFLMD 315

                   idsLftkWRyNHvvmVqRmlGsqKrGTGGSSGyaYLRsTvsdRykVFldL
                   idsLftkWRyNHv++VqRmlG+ K+GTGGSSGy+YLRsTvsdRykVFldL
    C28H8.11   316 IDSLFTKWRYNHVLLVQRMLGA-KQGTGGSSGYMYLRSTVSDRYKVFLDL 364

                   fnlstyL<-*
                   fnlst+L
    C28H8.11   365 FNLSTWL    371

[DB home][top]