Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C29E6.3
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Query: C29E6.3 CE17478 locus:pph-2 protein tyrosine phosphatase status:Partially_confirmed TR:Q18301 protein_id:CAA96607.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 145.5 2.9e-40 1
APSES APSES domain 13.5 0.026 1
ATP1G1_PLM_MAT8 ATP1G1/PLM/MAT8 family 5.1 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ATP1G1_PLM_MAT8 1/1 151 164 .. 44 57 .] 5.1 3
APSES 1/1 175 190 .. 1 16 [. 13.5 0.026
Y_phosphatase 1/1 158 391 .. 1 274 [] 145.5 2.9e-40
Alignments of top-scoring domains:
ATP1G1_PLM_MAT8: domain 1 of 1, from 151 to 164: score 5.1, E = 3
*->RCkfnkkqrqlned<-*
RCk ++++++n++
C29E6.3 151 RCKMWQSHSSRNRH 164
APSES: domain 1 of 1, from 175 to 190: score 13.5, E = 0.026
*->svmRRakDswiNaTqi<-*
+++ ++kD++iN+++i
C29E6.3 175 IIVQMCKDDYINGSKI 190
Y_phosphatase: domain 1 of 1, from 158 to 391: score 145.5, E = 2.9e-40
*->NkeKNRykdilpyDhtRVkLk.egsDYINAnyidgpqsrtlvvykkp
+ ++NR+ d +yDh+R++++ +DYIN + i++p + p
C29E6.3 158 HSSRNRHNDSKCYDHNRIIVQmCKDDYINGSKINVP-------HFTP 197
kayIaTQgPlp..nTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaq
y + +++ + +e+FWr v++++++++ + +++E ++
C29E6.3 198 SIYLVQLPKMDsvDAVEEFWRVVFHEQCQTVHIIARPEELTN--PA-IDK 244
YWPeeggeeggsltyG.ditVtlvseekk...ddddytvRtleltn.gde
+ + e+g + y ++++V+++++ekk++ d ++v+ l+ +++
C29E6.3 245 LFCQ----ESGAWLYAnGFFVNTRKVEKKenaKADMFVVELLPEGCsN-- 288
skneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqs
++ +y +t W+ P+ + + ++ +++ k +
C29E6.3 289 -------------AVMCSVYLHTYWKPLFGPDR-FGAQIRAAHQIAKNEN 324
qenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaeg
++ P+v+ + +G GR +++ ++ ++ +ql++++
C29E6.3 325 ----------GNS-------PTVIASVNGSGRNAALLTLAVVEDQLTRGK 357
vvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
++ i +iv+++R+qRp++V+++ QY+ +y+a +
C29E6.3 358 EP-KISEIVRTIREQRPQSVDSYIQYVSLYMATNW 391