Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C29F7.6
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Query: C29F7.6 CE08447 status:Partially_confirmed TR:O17619 protein_id:CAB07325.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
jmjC jmjC domain 157.2 1.5e-44 1
HSP9_HSP12 Heat shock protein 9 / 12 4.5 4.2 1
SAPS SIT4 phosphatase-associated protein 2.8 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SAPS 1/1 110 136 .. 1 33 [. 2.8 5.6
HSP9_HSP12 1/1 411 423 .. 47 59 .] 4.5 4.2
jmjC 1/1 497 605 .. 1 126 [] 157.2 1.5e-44
Alignments of top-scoring domains:
SAPS: domain 1 of 1, from 110 to 136: score 2.8, E = 5.6
*->neiLLdrkteqDWFLYQHmCLQlleFlkskdnf<-*
n +LL ++t L +leF+ks+d++
C29F7.6 110 NIHLLPENTNK------ETKLKILEFIKSEDEV 136
HSP9_HSP12: domain 1 of 1, from 411 to 423: score 4.5, E = 4.2
*->dddKStvQkAhDk<-*
+++ ++vQ+A D+
C29F7.6 411 ENQAGFVQEAVDA 423
jmjC: domain 1 of 1, from 497 to 605: score 157.2, E = 1.5e-44
*->wlylGmpfsttpwHiedqglySinylhfgapkvWyiiPpeyaekfek
++y+++p+s+t +Hie+q+ +S+n ++++++++Wy++++e++ kfe
C29F7.6 497 QMYFKQPGSRTTCHIENQAIGSLNLNLGPGKCIWYAVASEHSAKFE- 542
lhkflskhgpapdleggeqpdldlrhlltlisPkvlpLlenGipvyrfvQ
+l+k++ l+ +++ ++P++++Ll++Gipv++f Q
C29F7.6 543 --QLLMKKN--------------LWPYDSVLWPNEEELLNWGIPVMKFIQ 576
kpGEfVftfPGayHqVfNlGfniaeavNF<-*
+ +++V++ +G+yH+V+++Gf+ ++++N+
C29F7.6 577 ETDDTVYVGTGTYHWVQSIGFTGNVSWNI 605