Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C29H12.3a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C29H12.3a CE29201 1R20 protein (Human) status:Confirmed SW:Q18312 protein_id:AAL02450.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RGS Regulator of G protein signaling doma 133.7 1.9e-36 2
Peptidase_M16_C Peptidase M16 inactive domain 8.4 0.37 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M16_C 1/1 140 165 .. 172 197 .] 8.4 0.37
RGS 1/2 115 225 .. 4 146 .] 37.0 3.6e-09
RGS 2/2 240 359 .. 1 146 [] 95.9 8.8e-26
Alignments of top-scoring domains:
Peptidase_M16_C: domain 1 of 1, from 140 to 165: score 8.4, E = 0.37
*->lileeleklaeeGiteeeleraknql<-*
++le++ekl++ +i++e ++ ak++l
C29H12.3a 140 AFLEAMEKLKKMKISDEKVAYAKEIL 165
RGS: domain 1 of 2, from 115 to 225: score 37.0, E = 3.6e-09
*->klldkqpiGrllFreFLetefsepkenleFwlaveeyektespadkr
++l ++ G+ lFr FL + e enl F++a e+++k++ d+
C29H12.3a 115 NVL-NDDKGKQLFRVFLFQSLAE--ENLAFLEAMEKLKKMKIS-DEK 157
sdkarekesiEtLaaAYGIydeFispeapkfevnldselrestqdnllea
a+e I +++ + ++nl+s ++ s ++ ++
C29H12.3a 158 VAYAKE------------ILETY-----QG-SINLSSSSMKSLRNAVASE 189
vededllksLqptkdlFeeaqreiytlMrgDSfprFLeSdyylrfL<-*
+ F +a++e+ +l+++D fprF +S+ yl+ L
C29H12.3a 190 ----------TLDMEEFAPAIKEVRRLLENDQFPRFRRSELYLEYL 225
RGS: domain 2 of 2, from 240 to 359: score 95.9, E = 8.8e-26
*->sfeklldkqpiGrllFreFLetefsepkenleFwlaveeyektespa
sfe ll + +Gr Fr FL++ e enl+Fw+av e++ ++a
C29H12.3a 240 SFEGLL-GNHVGRHHFRIFLRSIHAE--ENLRFWEAVVEFRSSRHKA 283
dkrsdkarekesiEtLaaAYGIydeFispeapkfevnldselrestqdnl
+ +++ ++ I +++++++ + ev+l++ +r+ ++ ++
C29H12.3a 284 NAMNNLGKV------------ILSTYLAEGTTN-EVFLPFGVRQVIERRI 320
leavededllksLqptkdlFeeaqreiytlMrgDSfprFLeSdyylrfL<
+++ q +lF+ea++++ + +r+D++ rFL+S+ y ++L
C29H12.3a 321 QDN----------QIDITLFDEAIKHVEQVLRNDPYVRFLQSSQYIDLL 359
-*
C29H12.3a - -